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These are the Mouse developmental IDEAS epigenomic states based on ENCODE H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me3, H3K9ac, H3K9me3, ATAC and DNA methylation data used. They are referenced in Figure 4, Extended Data Figures 13 and 14 and related text in the changing mouse embryo transcriptome at whole tissue and single-cell resolution
To load the full track into the UCSC browser load this track hub ENCODE3_Mouse_RNA_paper_yuzhang_me66n/hub_me66n.txt.
A table of the limb-cell-type-specific IDEAS elements can be found in Supplementary Data 6.
We also created a summary of the limb IDEAS calls in IDEAS regions
These files files below were downloaded from http://bx.psu.edu/~yuzhang/me66/hub_me66n.txt on Jun 19, 2020. The original maintainer was yzz2 at psu.edu
I altered the bigDataUrls to use relative URLs instead of absolute URLs to make it easier to move the trackhub around. The original tracksDb file is available as trackDb_me66n.orig.txt.
The descriptions for each big bed file can be found by reading the trackDb_me66n.txt file. The root directory of the track hub is viewable and can be used to download individual bigbed files.
Diane Trout
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| HEADER.html | 2020-06-21 16:33 | 2.0K | |
| genomes_me66n.txt | 2020-06-19 09:58 | 38 | |
| hub_me66n.txt | 2020-06-19 17:13 | 124 | |
| me66n.1.bb | 2020-06-19 10:09 | 88M | |
| me66n.2.bb | 2020-06-19 10:10 | 89M | |
| me66n.3.bb | 2020-06-19 10:10 | 88M | |
| me66n.4.bb | 2020-06-19 10:10 | 84M | |
| me66n.5.bb | 2020-06-19 10:10 | 89M | |
| me66n.6.bb | 2020-06-19 10:10 | 85M | |
| me66n.7.bb | 2020-06-19 10:10 | 85M | |
| me66n.8.bb | 2020-06-19 10:11 | 89M | |
| me66n.9.bb | 2020-06-19 10:11 | 89M | |
| me66n.10.bb | 2020-06-19 10:11 | 85M | |
| me66n.11.bb | 2020-06-19 10:11 | 89M | |
| me66n.12.bb | 2020-06-19 10:12 | 87M | |
| me66n.13.bb | 2020-06-19 10:12 | 85M | |
| me66n.14.bb | 2020-06-19 10:12 | 86M | |
| me66n.15.bb | 2020-06-19 10:12 | 90M | |
| me66n.16.bb | 2020-06-19 10:12 | 87M | |
| me66n.17.bb | 2020-06-19 10:12 | 84M | |
| me66n.18.bb | 2020-06-19 10:13 | 89M | |
| me66n.19.bb | 2020-06-19 10:13 | 86M | |
| me66n.20.bb | 2020-06-19 10:13 | 85M | |
| me66n.21.bb | 2020-06-19 10:13 | 87M | |
| me66n.22.bb | 2020-06-19 10:13 | 89M | |
| me66n.23.bb | 2020-06-19 10:14 | 89M | |
| me66n.24.bb | 2020-06-19 10:14 | 85M | |
| me66n.25.bb | 2020-06-19 10:14 | 90M | |
| me66n.26.bb | 2020-06-19 10:14 | 87M | |
| me66n.27.bb | 2020-06-19 10:14 | 85M | |
| me66n.28.bb | 2020-06-19 10:15 | 84M | |
| me66n.29.bb | 2020-06-19 10:15 | 91M | |
| me66n.30.bb | 2020-06-19 10:15 | 87M | |
| me66n.31.bb | 2020-06-19 10:15 | 86M | |
| me66n.32.bb | 2020-06-19 10:15 | 85M | |
| me66n.33.bb | 2020-06-19 10:16 | 88M | |
| me66n.34.bb | 2020-06-19 10:16 | 86M | |
| me66n.35.bb | 2020-06-19 10:16 | 86M | |
| me66n.36.bb | 2020-06-19 10:16 | 88M | |
| me66n.37.bb | 2020-06-19 10:16 | 88M | |
| me66n.38.bb | 2020-06-19 10:17 | 85M | |
| me66n.39.bb | 2020-06-19 10:17 | 89M | |
| me66n.40.bb | 2020-06-19 10:17 | 85M | |
| me66n.41.bb | 2020-06-19 10:17 | 86M | |
| me66n.42.bb | 2020-06-19 10:17 | 87M | |
| me66n.43.bb | 2020-06-19 10:18 | 88M | |
| me66n.44.bb | 2020-06-19 10:18 | 85M | |
| me66n.45.bb | 2020-06-19 10:18 | 87M | |
| me66n.46.bb | 2020-06-19 10:18 | 86M | |
| me66n.47.bb | 2020-06-19 10:18 | 85M | |
| me66n.48.bb | 2020-06-19 10:18 | 85M | |
| me66n.49.bb | 2020-06-19 10:19 | 88M | |
| me66n.50.bb | 2020-06-19 10:19 | 85M | |
| me66n.51.bb | 2020-06-19 10:19 | 86M | |
| me66n.52.bb | 2020-06-19 10:19 | 85M | |
| me66n.53.bb | 2020-06-19 10:19 | 89M | |
| me66n.54.bb | 2020-06-19 10:20 | 89M | |
| me66n.55.bb | 2020-06-19 10:20 | 85M | |
| me66n.56.bb | 2020-06-19 10:20 | 90M | |
| me66n.57.bb | 2020-06-19 10:20 | 88M | |
| me66n.58.bb | 2020-06-19 10:20 | 84M | |
| me66n.59.bb | 2020-06-19 10:21 | 90M | |
| me66n.60.bb | 2020-06-19 10:21 | 88M | |
| me66n.61.bb | 2020-06-19 10:21 | 85M | |
| me66n.62.bb | 2020-06-19 10:21 | 90M | |
| me66n.63.bb | 2020-06-19 10:21 | 87M | |
| me66n.64.bb | 2020-06-19 10:22 | 85M | |
| me66n.65.bb | 2020-06-19 10:22 | 90M | |
| me66n.66.bb | 2020-06-19 10:22 | 87M | |
| trackDb_me66n.txt | 2020-06-19 10:25 | 12K | |
| trackDb_me66n_orig.txt | 2020-06-19 10:25 | 14K | |