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Contents
Contents
CompClustTk
Manual & Tutorial
Brandon King & Diane Trout
Copyright ©California Institute of Technology
Version 1.0
May 27, 2005
Contents
Introduction
Purpose
CompClust Background
Where to get help?
What's New
Tutorial Background
Microarray Data
CompClust Datasets
CompClust Labelings
Cho Example Data
CompClustTk
Introduction
Load Data Set
Attach Labelings
Clustering
Introduction to Clustering
DiagEM
KMeans
Analysis
Introduction
Trajectory Summary
Confusion Matrix
ROC Analysis
PCA Explorer
Advanced Analysis - IPython
Introduction
Analysis Shell and Log 2 Transform Example
Advanced Analysis Shell
CompClust Python Package
More of CompClust
Other CompClust Tutorials
A Quick Start Guide to Microarray Analysis using CompClust
A First Tutorial on the MLX schema
Acknowledgements
Bibliography
About this document ...
Brandon King 2005-05-27
