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Next we create the PCAGinsu scatter plot, one important detail is that the IPlot branch of uses zero based arrays, e.g. it counts each principal component as 0, 1, 2, etc. The web interface is built using this version and as python arrays and lists are 0 based it was simpler to make these functions compatible.
The following plotPCvcPCWithOutliersInY call will create a scatter plot displaying principal component 1 along the X axis, and component 2 along the Y axis, while highlighting the 10 highest and lowest outliers. The value 10 outliers was set by the above PCAGinsu call.
ipcaginsu.plotPCvsPCWithOutliersInY(0,1)