Usage: HutSOM.py parameter_filename input_filename results_filename
Wrapper for Matlab SOM Toolbox Algorithm
Depends on the following environment variables:
MATLAB_CODE_HOME (e.g., /home/proj/code/matlab)
SOM_TOOLBOX_HOME (e.g., /home/proj/code/matlab/somtoolbox)
transform_method
One of none, log, histD, var
init_method
Choose initial positioning of the SOM nodes
One of linear, random
som_x_dimension
Map x dimension
som_y_dimension
Map y dimension
num_iterations
number of iterations update node locations
|
Imported modules
|
|
from compClust.mlx import ML_Algorithm
from compClust.mlx.labelings import Labeling
from compClust.mlx.models import DistanceFromMean
import compClust.mlx.wrapper
from compClust.util import WrapperUtil, Usage, Verify
from compClust.util.TimeStampedPrintStream import TimeStampedPrintStream
import os
import string
import sys
import tempfile
import types
|
|
Classes
|
|
|
|
|