2 ## Override submission ID to library URN names for our libraries
3 ## whose names either lack, or have the wrong library ID string
7 @base <file:///home/diane/proj/solexa/htsworkflow/extra/ucsc_encode_submission/no-lib.sparql> .
8 @prefix ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#> .
10 # woldlab-hepg2-rnaseq-2009dec
11 <http://encodesubmit.ucsc.edu/pipeline/show/805>
12 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
14 # woldlab-hepg2-rnaseq-2009dec-part2
15 <http://encodesubmit.ucsc.edu/pipeline/show/810>
16 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
18 # woldlab-hepg2-rnaseq-2009dec-part3
19 <http://encodesubmit.ucsc.edu/pipeline/show/869>
20 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
22 # woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
23 <http://encodesubmit.ucsc.edu/pipeline/show/870>
24 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11011/> .
26 # woldlab-hepg2-rnaseq-2010Jan-part4
27 <http://encodesubmit.ucsc.edu/pipeline/show/897>
28 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
30 # woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
31 <http://encodesubmit.ucsc.edu/pipeline/show/898>
32 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
34 # woldlab-K562-directional-rnaseq-rep1-2010Jan6
35 <http://encodesubmit.ucsc.edu/pipeline/show/903>
36 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
38 # woldlab-K562-directional-rnaseq-rep2-2010jan9
39 <http://encodesubmit.ucsc.edu/pipeline/show/904>
40 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
42 # woldlab hESC 10886 rep1 2009Jan13
43 <http://encodesubmit.ucsc.edu/pipeline/show/1026>
44 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11286/> .
46 # woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
47 <http://encodesubmit.ucsc.edu/pipeline/show/1483>
48 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11204/> .
50 # woldlab Jun18 1x75-Directional-H1-hESC-Rep2
51 <http://encodesubmit.ucsc.edu/pipeline/show/1626>
52 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11009/> .
54 # woldlab jun 18 1x75-Directional-GM12878-Rep1
55 <http://encodesubmit.ucsc.edu/pipeline/show/1631>
56 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11011/> .
58 # woldlab jun 18 1x75-Directional-GM12878-Rep2
59 <http://encodesubmit.ucsc.edu/pipeline/show/1632>
60 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
62 # woldlab jun 18 1x75-Directional-H1-hESC-Rep1
63 <http://encodesubmit.ucsc.edu/pipeline/show/1633>
64 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10947/> .
66 # woldlab jun 18 1x75-Directional-HeLa-Rep1
67 <http://encodesubmit.ucsc.edu/pipeline/show/1634>
68 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11208/> .
70 # woldlab jun 18 1x75-Directional-HeLa-Rep2
71 <http://encodesubmit.ucsc.edu/pipeline/show/1635>
72 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11207/> .
74 # woldlab jun 18 1x75-Directional-HepG2-Rep1
75 <http://encodesubmit.ucsc.edu/pipeline/show/1636>
76 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .
78 # woldlab jun 18 1x75-Directional-K562-Rep1
79 <http://encodesubmit.ucsc.edu/pipeline/show/1637>
80 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11008/> .
82 # woldlab jun 18 1x75-Directional-HepG2-Rep2
83 <http://encodesubmit.ucsc.edu/pipeline/show/1638>
84 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
86 # woldlab jun 18 1x75-Directional-HUVEC-Rep1
87 <http://encodesubmit.ucsc.edu/pipeline/show/1639>
88 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11206/> .
90 # woldlab jun 18 1x75-Directional-HUVEC-Rep2
91 <http://encodesubmit.ucsc.edu/pipeline/show/1645>
92 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
94 # woldlab jun 18 1x75-Directional-K562-Rep2
95 <http://encodesubmit.ucsc.edu/pipeline/show/1646>
96 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
98 # woldlab June 2x75-GM12878-Rep2
99 <http://encodesubmit.ucsc.edu/pipeline/show/1856>
100 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10515/> .
102 #2010 jul 9corrected fastqs
103 <http://encodesubmit.ucsc.edu/pipeline/show/1874>
104 ucscSubmission:ignore "1" .
105 # ucscSubmission:library_urn "
107 # 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
108 <http://encodesubmit.ucsc.edu/pipeline/show/2926>
109 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
111 # 1x75-Directional-GM12878-Rep2
112 <http://encodesubmit.ucsc.edu/pipeline/show/2930>
113 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
115 # 1x75-Directional-H1-hESC-Rep1
116 <http://encodesubmit.ucsc.edu/pipeline/show/2931>
117 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10947/> .
119 # 1x75-Directional-H1-hESC-Rep2
120 <http://encodesubmit.ucsc.edu/pipeline/show/2932>
121 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
123 # 1x75-Directional-HUVEC-Rep1
124 <http://encodesubmit.ucsc.edu/pipeline/show/2933>
125 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11206/> .
127 # 1x75-Directional-HUVEC-Rep2
128 <http://encodesubmit.ucsc.edu/pipeline/show/2934>
129 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
131 # 1x75-Directional-HeLa-Rep1
132 <http://encodesubmit.ucsc.edu/pipeline/show/2935>
133 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11208/> .
135 # 1x75-Directional-HeLa-Rep2
136 <http://encodesubmit.ucsc.edu/pipeline/show/2936>
137 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11207/> .
139 # 1x75-Directional-HepG2-Rep1
140 <http://encodesubmit.ucsc.edu/pipeline/show/2937>
141 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .
143 # 1x75-Directional-HepG2-Rep2
144 <http://encodesubmit.ucsc.edu/pipeline/show/2938>
145 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
147 # 1x75-Directional-K562-Rep1
148 <http://encodesubmit.ucsc.edu/pipeline/show/2939>
149 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11008/> .
151 # 1x75-Directional-K562-Rep2
152 <http://encodesubmit.ucsc.edu/pipeline/show/2940>
153 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
155 # 1x75-Directional-NHEK-Rep1
156 <http://encodesubmit.ucsc.edu/pipeline/show/2941>
157 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11204/> .
159 # "3438 fastq resubmit"
160 <http://encodesubmit.ucsc.edu/pipeline/show/4607>
161 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02970/> .
163 # "3439 fastq resubmit"
164 <http://encodesubmit.ucsc.edu/pipeline/show/4608>
165 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02973/> .
167 # "3437 Fastq re-submission"
168 <http://encodesubmit.ucsc.edu/pipeline/show/4609>
169 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02971/> .
171 # "1x75-Directional-HepG2-rep2-replace 3522"
172 <http://encodesubmit.ucsc.edu/pipeline/show/4797>
173 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
175 # "1x75-Directional-HepG2-rep1 replacement of 3521"
176 <http://encodesubmit.ucsc.edu/pipeline/show/4798>
177 ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .