experiments/fixtures/initial_data.json

   1 [
   2   { "model": "experiments.FileType",
   3     "pk": 1,
   4     "fields": {
   5       "name": "run_xml",
   6       "mimetype": "application/vnd.htsworkflow-run-xml",
   7       "regex": "run.*\\.xml\\Z(?ms)"
   8     }
   9   },
  10   { "model": "experiments.FileType",
  11     "pk": 2,
  12     "fields": {
  13       "name": "Summary.htm",
  14       "mimetype": "text/html",
  15       "regex": "Summary\\.htm\\Z(?ms)"
  16     }
  17   },
  18
  19   { "model": "experiments.FileType",
  20     "pk": 3,
  21     "fields": {
  22       "name": "IVC All",
  23       "mimetype": "image/png",
  24       "regex": "s_(?P<lane>[0-9])_all\\.png\\Z(?ms)"
  25     }
  26   },
  27   { "model": "experiments.FileType",
  28     "pk": 4,
  29     "fields": {
  30       "name": "IVC Call",
  31       "mimetype": "image/png",
  32       "regex": "s_(?P<lane>[0-9])_call\\.png\\Z(?ms)"
  33     }
  34   },
  35   { "model": "experiments.FileType",
  36     "pk": 5,
  37     "fields": {
  38       "name": "IVC Percent All",
  39       "mimetype": "image/png",
  40       "regex": "s_(?P<lane>[0-9])_percent_all\\.png\\Z(?ms)"
  41     }
  42   },
  43   { "model": "experiments.FileType",
  44     "pk": 6,
  45     "fields": {
  46       "name": "IVC Percent Base",
  47       "mimetype": "image/png",
  48       "regex": "s_(?P<lane>[0-9])_percent_base\\.png\\Z(?ms)"
  49     }
  50   },
  51   { "model": "experiments.FileType",
  52     "pk": 7,
  53     "fields": {
  54       "name": "IVC Percent Call",
  55       "mimetype": "image/png",
  56       "regex": "s_(?P<lane>[0-9])_percent_call\\.png\\Z(?ms)"
  57     }
  58   },
  59   { "model": "experiments.FileType",
  60     "pk": 8,
  61     "fields": {
  62       "name": "GERALD Scores",
  63       "regex": "scores\\.tar\\.bz2\\Z(?ms)"
  64     }
  65   },
  66   { "model": "experiments.FileType",
  67     "pk": 9,
  68     "fields": {
  69       "name": "ELAND Result",
  70       "mimetype": "chemical/seq-na-eland",
  71       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_result\\.txt\\.bz2\\Z(?ms)"
  72     }
  73   },
  74   { "model": "experiments.FileType",
  75     "pk": 10,
  76     "fields": {
  77       "name": "ELAND Multi",
  78       "mimetype": "chemical/seq-na-eland",
  79       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_multi\\.txt\\.bz2\\Z(?ms)"
  80     }
  81   },
  82   { "model": "experiments.FileType",
  83     "pk": 11,
  84     "fields": {
  85       "name": "ELAND Extended",
  86       "mimetype": "chemical/seq-na-eland",
  87       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_extended\\.txt\\.bz2\\Z(?ms)"
  88     }
  89   },
  90   { "model": "experiments.FileType",
  91     "pk": 12,
  92     "fields": {
  93       "name": "ELAND Export",
  94       "mimetype": "chemical/seq-na-eland",
  95       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_export\\.txt\\.bz2\\Z(?ms)"
  96     }
  97   },
  98   { "model": "experiments.FileType",
  99     "pk": 13,
 100     "fields": {
 101       "name": "SRF",
 102       "mimetype": "chemical/seq-na-srf",
 103       "regex": ".*_(?P<lane>[1-8])\\.srf\\Z(?ms)"
 104     }
 105   },
 106   { "model": "experiments.FileType",
 107     "pk": 14,
 108     "fields": {
 109       "name": "QSEQ tarfile",
 110       "mimetype": "chemical/seq-na-qseq",
 111       "regex": ".*_l(?P<lane>[1-8])_r(?P<end>[1-4])\\.tar\\.bz2\\Z(?ms)"
 112     }
 113   },
 114   { "model": "experiments.FileType",
 115     "pk": 15,
 116     "fields": {
 117       "name": "HiSeq Fastq",
 118       "mimetype": "chemical/seq-na-fastq",
 119       "regex": "(?P<library>[0-9]+)_(NoIndex|[AGCT]+)_L(?P<lane>[0-9]+)_R(?P<end>[12])_(?P<split>[0-9]+)\\.fastq\\.gz"
 120     }
 121   }
 122 ]