1 from django.contrib import admin
2 from django.contrib.admin import widgets
3 from django.contrib.admin.models import User
4 from django.contrib.auth.admin import UserAdmin
5 from django.contrib.auth.forms import UserCreationForm, UserChangeForm
6 from django.db import models
7 from django.utils.translation import ugettext_lazy as _
9 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, ExperimentType, HTSUser, LibraryType, Species, Affiliation, Library, Tag
10 from htsworkflow.frontend.experiments.models import Lane
12 class AffiliationOptions(admin.ModelAdmin):
13 list_display = ('name','contact','email')
16 'fields': (('name','contact','email','users'))
20 # some post 1.0.2 version of django has formfield_overrides
21 # which would replace this code with:
22 # formfield_overrids = {
23 # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
25 def formfield_for_dbfield(self, db_field, **kwargs):
26 if db_field.name == 'users':
27 kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
28 rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
29 # print db_field.name, kwargs
32 class AntibodyOptions(admin.ModelAdmin):
33 search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
34 list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
35 list_filter = ('antibodies','source')
38 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
42 class CelllineOptions(admin.ModelAdmin):
43 list_display = ('cellline_name', 'nickname', 'notes')
44 search_fields = ('cellline_name', 'nickname', 'notes')
47 'fields': (('cellline_name'),('notes'),)
51 class ConditionOptions(admin.ModelAdmin):
52 list_display = (('condition_name'), ('notes'),)
55 'fields': (('condition_name'),('nickname'),('notes'),)
59 class ExperimentTypeOptions(admin.ModelAdmin):
60 model = ExperimentType
61 #list_display = ('name',)
62 #fieldsets = ( (None, { 'fields': ('name',) }), )
64 class HTSUserCreationForm(UserCreationForm):
67 fields = ("username",)
69 class HTSUserChangeForm(UserChangeForm):
73 class HTSUserOptions(UserAdmin):
74 form = HTSUserChangeForm
75 add_form = HTSUserCreationForm
78 class LaneLibraryInline(admin.StackedInline):
82 class Library_Inline(admin.TabularInline):
85 class LibraryTypeOptions(admin.ModelAdmin):
88 class LibraryOptions(admin.ModelAdmin):
89 date_hierarchy = "creation_date"
95 'cell_line__cellline_name',
96 'library_species__scientific_name',
97 'library_species__common_name',
113 'undiluted_concentration',
131 list_display_links = ('library_id', 'library_name',)
135 ('library_id','library_name','hidden'),
137 ('library_type', 'experiment_type', 'replicate'),
138 ('cell_line','condition','antibody'),)
140 ('Creation Information:', {
141 'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
143 ('Library/Project Affiliation:', {
144 'fields' : (('affiliations'), ('tags'),)
151 # some post 1.0.2 version of django has formfield_overrides
152 # which would replace this code with:
153 # formfield_overrids = {
154 # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
156 def formfield_for_dbfield(self, db_field, **kwargs):
157 if db_field.name == 'affiliations':
158 kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
159 rv = super(LibraryOptions, self).formfield_for_dbfield(db_field, **kwargs)
162 class SpeciesOptions(admin.ModelAdmin):
165 'fields': (('scientific_name', 'common_name'),)
169 class TagOptions(admin.ModelAdmin):
170 list_display = ('tag_name', 'context')
173 'fields': ('tag_name', 'context')
177 admin.site.register(Affiliation, AffiliationOptions)
178 admin.site.register(Antibody, AntibodyOptions)
179 admin.site.register(Cellline, CelllineOptions)
180 admin.site.register(Condition, ConditionOptions)
181 admin.site.register(ExperimentType, ExperimentTypeOptions)
182 admin.site.register(HTSUser, HTSUserOptions)
183 admin.site.register(LibraryType, LibraryTypeOptions)
184 admin.site.register(Library, LibraryOptions)
185 admin.site.register(Species, SpeciesOptions)
186 admin.site.register(Tag, TagOptions)