080920_HWI-EAS229_0057_30GBJAAXX Summary
Summary Information For Experiment 080920_HWI-EAS229_0057_30GBJAAXX on Machine unknown
Chip Summary
Machine | UNKNOWN |
Run Folder | 080920_HWI-EAS229_0057_30GBJAAXX |
Chip ID | unknown |
Chip Results Summary
Clusters |
Clusters (PF) |
Yield (kbases) |
126151880 |
95923456 |
3549167 |
Lane Parameter Summary
Lane |
Sample ID |
Sample Target |
Sample Type |
Length |
Filter |
Num Tiles |
Tiles |
1 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 1 |
2 |
unknown |
hg18 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 2 |
3 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 3 |
4 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 4 |
5 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 5 |
6 |
unknown |
hg18 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 6 |
7 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 7 |
8 |
unknown |
mm9 |
ELAND_PAIR |
37, 37 |
'((CHASTITY>=0.6))' |
100 |
Lane 8 |
Lane Results Summary : Read 1
Lane Info |
Tile Mean +/- SD for Lane |
Lane |
Lane Yield (kbases) |
Clusters (raw) |
Clusters (PF) |
1st Cycle Int (PF) |
% intensity after 20 cycles (PF) |
% PF Clusters |
% Align (PF) |
Alignment Score (PF) |
% Error Rate (PF) |
1 |
277083 |
103646 +/- 4515 |
74887 +/- 6080 |
290 +/- 17 |
99.34 +/- 3.52 |
72.22 +/- 4.63 |
89.19 +/- 0.59 |
14.16 +/- 0.63 |
0.94 +/- 0.17 |
2 |
289563 |
106678 +/- 4652 |
78260 +/- 2539 |
294 +/- 16 |
98.23 +/- 2.66 |
73.43 +/- 2.52 |
87.05 +/- 0.64 |
16.81 +/- 0.55 |
0.92 +/- 0.17 |
3 |
259242 |
84583 +/- 5963 |
70065 +/- 4194 |
284 +/- 18 |
99.82 +/- 3.05 |
82.90 +/- 1.32 |
89.49 +/- 0.20 |
18.13 +/- 0.66 |
0.81 +/- 0.13 |
4 |
210549 |
68813 +/- 4782 |
56905 +/- 4145 |
300 +/- 29 |
102.00 +/- 14.74 |
82.91 +/- 5.89 |
56.93 +/- 0.82 |
25.85 +/- 2.30 |
0.95 +/- 0.30 |
5 |
295555 |
104854 +/- 4664 |
79879 +/- 6270 |
281 +/- 19 |
98.26 +/- 5.85 |
76.34 +/- 6.67 |
57.71 +/- 0.30 |
26.16 +/- 1.68 |
0.97 +/- 0.19 |
6 |
140401 |
43555 +/- 1632 |
37946 +/- 2140 |
233 +/- 16 |
105.74 +/- 8.40 |
87.14 +/- 3.87 |
89.08 +/- 1.00 |
33.53 +/- 2.18 |
1.05 +/- 0.21 |
7 |
154217 |
54265 +/- 1588 |
41680 +/- 5319 |
224 +/- 18 |
111.33 +/- 8.90 |
76.94 +/- 10.52 |
84.50 +/- 1.41 |
27.44 +/- 2.33 |
1.32 +/- 0.25 |
8 |
147969 |
64363 +/- 2697 |
39991 +/- 6785 |
248 +/- 43 |
109.93 +/- 7.80 |
62.45 +/- 12.05 |
82.20 +/- 2.08 |
24.63 +/- 2.53 |
1.57 +/- 0.22 |
Tile mean across chip |
Av. |
|
78844 |
59952 |
269 |
103.08 |
76.79 |
79.52 |
23.34 |
1.06 |
Lane Results Summary : Read 2
Lane Info |
Tile Mean +/- SD for Lane |
Lane |
Lane Yield (kbases) |
Clusters (raw) |
Clusters (PF) |
1st Cycle Int (PF) |
% intensity after 20 cycles (PF) |
% PF Clusters |
% Align (PF) |
Alignment Score (PF) |
% Error Rate (PF) |
1 |
277083 |
103647 +/- 4516 |
74887 +/- 6080 |
277 +/- 17 |
94.42 +/- 5.68 |
72.22 +/- 4.63 |
81.54 +/- 2.13 |
42.70 +/- 5.49 |
0.89 +/- 0.27 |
2 |
289563 |
106679 +/- 4653 |
78260 +/- 2539 |
259 +/- 13 |
93.57 +/- 2.55 |
73.43 +/- 2.52 |
82.05 +/- 0.37 |
43.98 +/- 3.02 |
0.76 +/- 0.15 |
3 |
259242 |
84584 +/- 5964 |
70065 +/- 4194 |
252 +/- 12 |
94.23 +/- 2.19 |
82.90 +/- 1.32 |
84.94 +/- 0.28 |
51.76 +/- 2.29 |
0.59 +/- 0.07 |
4 |
210549 |
68814 +/- 4783 |
56905 +/- 4145 |
226 +/- 16 |
96.82 +/- 7.12 |
82.91 +/- 5.89 |
56.01 +/- 0.99 |
27.86 +/- 3.48 |
0.95 +/- 0.33 |
5 |
295555 |
104855 +/- 4665 |
79879 +/- 6270 |
200 +/- 24 |
103.56 +/- 15.45 |
76.34 +/- 6.67 |
56.76 +/- 0.41 |
25.68 +/- 2.06 |
0.98 +/- 0.17 |
6 |
140401 |
43556 +/- 1633 |
37946 +/- 2140 |
179 +/- 10 |
100.82 +/- 5.47 |
87.14 +/- 3.87 |
88.64 +/- 1.42 |
34.05 +/- 2.60 |
0.98 +/- 0.22 |
7 |
154217 |
54266 +/- 1589 |
41680 +/- 5319 |
184 +/- 5 |
103.42 +/- 3.47 |
76.94 +/- 10.52 |
83.90 +/- 1.32 |
27.60 +/- 2.07 |
1.26 +/- 0.16 |
8 |
147969 |
64364 +/- 2698 |
39991 +/- 6785 |
206 +/- 31 |
99.48 +/- 3.23 |
62.45 +/- 12.05 |
79.81 +/- 3.35 |
23.06 +/- 2.50 |
1.56 +/- 0.23 |
Tile mean across chip |
Av. |
|
78844 |
59952 |
223 |
98.29 |
76.79 |
76.70 |
34.59 |
1.00 |
Expanded Lane Summary : Read 1
Lane Info |
Phasing Info |
Raw Data (tile mean) |
Filtered Data (tile mean) |
Lane |
Clusters (tile mean) (raw) |
% Phasing |
% Prephasing |
% Error Rate (raw) |
Equiv Perfect Clusters (raw) |
% retained |
Cycle 2-4 Av Int (PF) |
Cycle 2-10 Av % Loss (PF) |
Cycle 10-20 Av % Loss (PF) |
% Align (PF) |
% Error Rate (PF) |
Equiv Perfect Clusters (PF) |
1 |
103646 |
0.8600 |
0.4900 |
1.37 |
74813 |
72.22 |
266 +/- 17 |
-0.53 +/- 0.37 |
-0.42 +/- 0.21 |
89.19 |
0.94 |
64718 |
2 |
106678 |
0.8600 |
0.4900 |
1.34 |
74842 |
73.43 |
284 +/- 16 |
0.08 +/- 0.43 |
-0.17 +/- 0.34 |
87.05 |
0.92 |
65850 |
3 |
84583 |
0.8600 |
0.4900 |
1.09 |
65493 |
82.90 |
286 +/- 14 |
0.29 +/- 0.48 |
-0.02 +/- 0.17 |
89.49 |
0.81 |
60899 |
4 |
68813 |
0.8600 |
0.4900 |
1.19 |
33697 |
82.91 |
286 +/- 23 |
-0.01 +/- 0.62 |
-0.37 +/- 0.30 |
56.93 |
0.95 |
31080 |
5 |
104854 |
0.8600 |
0.4900 |
1.32 |
50075 |
76.34 |
258 +/- 25 |
-0.03 +/- 0.46 |
-0.49 +/- 0.27 |
57.71 |
0.97 |
44149 |
6 |
43555 |
0.8600 |
0.4900 |
1.24 |
34399 |
87.14 |
231 +/- 14 |
-0.19 +/- 0.46 |
-0.34 +/- 0.40 |
89.08 |
1.05 |
32302 |
7 |
54265 |
0.8600 |
0.4900 |
1.67 |
38188 |
76.94 |
224 +/- 14 |
-0.41 +/- 0.49 |
-0.55 +/- 0.23 |
84.50 |
1.32 |
33435 |
8 |
64363 |
0.8600 |
0.4900 |
2.15 |
38077 |
62.45 |
247 +/- 42 |
-0.52 +/- 0.36 |
-0.29 +/- 0.19 |
82.20 |
1.57 |
31036 |
Expanded Lane Summary : Read 2
Lane Info |
Phasing Info |
Raw Data (tile mean) |
Filtered Data (tile mean) |
Lane |
Clusters (tile mean) (raw) |
% Phasing |
% Prephasing |
% Error Rate (raw) |
Equiv Perfect Clusters (raw) |
% retained |
Cycle 2-4 Av Int (PF) |
Cycle 2-10 Av % Loss (PF) |
Cycle 10-20 Av % Loss (PF) |
% Align (PF) |
% Error Rate (PF) |
Equiv Perfect Clusters (PF) |
1 |
103646 |
0.7900 |
0.4600 |
1.24 |
68870 |
72.22 |
254 +/- 15 |
-0.53 +/- 0.37 |
-0.42 +/- 0.21 |
81.54 |
0.89 |
59272 |
2 |
106678 |
0.7900 |
0.4600 |
1.11 |
71980 |
73.43 |
247 +/- 12 |
0.08 +/- 0.43 |
-0.17 +/- 0.34 |
82.05 |
0.76 |
62240 |
3 |
84583 |
0.7900 |
0.4600 |
0.80 |
63500 |
82.90 |
243 +/- 8 |
0.29 +/- 0.48 |
-0.02 +/- 0.17 |
84.94 |
0.59 |
58029 |
4 |
68813 |
0.7900 |
0.4600 |
1.12 |
33534 |
82.91 |
210 +/- 19 |
-0.01 +/- 0.62 |
-0.37 +/- 0.30 |
56.01 |
0.95 |
30548 |
5 |
104854 |
0.7900 |
0.4600 |
1.24 |
49951 |
76.34 |
193 +/- 12 |
-0.03 +/- 0.46 |
-0.49 +/- 0.27 |
56.76 |
0.98 |
43366 |
6 |
43555 |
0.7900 |
0.4600 |
1.12 |
34751 |
87.14 |
174 +/- 7 |
-0.19 +/- 0.46 |
-0.34 +/- 0.40 |
88.64 |
0.98 |
32208 |
7 |
54265 |
0.7900 |
0.4600 |
1.55 |
38418 |
76.94 |
178 +/- 4 |
-0.41 +/- 0.49 |
-0.55 +/- 0.23 |
83.90 |
1.26 |
33240 |
8 |
64363 |
0.7900 |
0.4600 |
2.07 |
36968 |
62.45 |
198 +/- 32 |
-0.52 +/- 0.36 |
-0.29 +/- 0.19 |
79.81 |
1.56 |
30181 |