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This might actually generate soft file with raw & supplemental data.
[htsworkflow.git]
/
encode_submission
/
geo_gather.py
diff --git
a/encode_submission/geo_gather.py
b/encode_submission/geo_gather.py
index 9db286d37b6326e1b576e1045a3c04b5e92beabe..f9b07ab775a4491226db9c9b97215ea82f7cc54e 100644
(file)
--- a/
encode_submission/geo_gather.py
+++ b/
encode_submission/geo_gather.py
@@
-58,9
+58,7
@@
def main(cmdline=None):
model = get_model(opts.model, opts.db_path)
mapper = None
if opts.name:
model = get_model(opts.model, opts.db_path)
mapper = None
if opts.name:
- mapper = GEOSubmission(opts.name, model)
- if opts.library_url is not None:
- mapper.library_url = opts.library_url
+ mapper = GEOSubmission(opts.name, model, host=opts.host)
submission_uri = get_submission_uri(opts.name)
submission_uri = get_submission_uri(opts.name)