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Convert to unittest2
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
test
/
test_genomemap.py
diff --git
a/htsworkflow/pipelines/test/test_genomemap.py
b/htsworkflow/pipelines/test/test_genomemap.py
index d0c1e660e5a786c50794d278f164678026a5cb74..aa2f618f9324faca633dae27a0053ad76c14b54b 100644
(file)
--- a/
htsworkflow/pipelines/test/test_genomemap.py
+++ b/
htsworkflow/pipelines/test/test_genomemap.py
@@
-5,7
+5,7
@@
import os
from StringIO import StringIO
import shutil
import tempfile
from StringIO import StringIO
import shutil
import tempfile
-import unittest
+from unittest2 import TestCase
from htsworkflow.pipelines.runfolder import ElementTree
from htsworkflow.pipelines import genomemap
from htsworkflow.pipelines.runfolder import ElementTree
from htsworkflow.pipelines import genomemap
@@
-15,7
+15,7
@@
MINI_GENOME_XML = '''<sequenceSizes>
<chromosome fileName="chr1.fa" contigName="chr1" totalBases="197195432"/>
</sequenceSizes>
'''
<chromosome fileName="chr1.fa" contigName="chr1" totalBases="197195432"/>
</sequenceSizes>
'''
-class TestGenomeMap(
unittest.
TestCase):
+class TestGenomeMap(TestCase):
def test_genomesizes_xml(self):
xml = ElementTree.fromstring(MINI_GENOME_XML)
g = genomemap.GenomeMap()
def test_genomesizes_xml(self):
xml = ElementTree.fromstring(MINI_GENOME_XML)
g = genomemap.GenomeMap()
@@
-76,5
+76,13
@@
class TestGenomeMap(unittest.TestCase):
self.assertEqual(g['chr1.fa'], '{0}/chr1.fa'.format(tempgenome))
self.assertEqual(g['chr1.fa'], '{0}/chr1.fa'.format(tempgenome))
+def suite():
+ from unittest2 import TestSuite, defaultTestLoader
+ suite = TestSuite()
+ suite.addTests(defaultTestLoader.loadTestsFromTestCase(TestGenomeMap))
+ return suite
+
+
if __name__ == "__main__":
if __name__ == "__main__":
- unittest.main()
+ from unittest2 import main
+ main(defaultTest="suite")