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Progress using rdf model to link fastqs with flowcell/lib metadata.
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
test
/
test_sequences.py
diff --git
a/htsworkflow/pipelines/test/test_sequences.py
b/htsworkflow/pipelines/test/test_sequences.py
index d051c036ca2eddda6ffbbc1cc3f1c1f31bb5fcea..34ddeab593da5636386a7f0a7254a5e2af1b53e4 100644
(file)
--- a/
htsworkflow/pipelines/test/test_sequences.py
+++ b/
htsworkflow/pipelines/test/test_sequences.py
@@
-344,13
+344,19
@@
class SequenceFileTests(unittest.TestCase):
seq.save_to_model(model)
files = list(model.find_statements(
seq.save_to_model(model)
files = list(model.find_statements(
- RDF.Statement(None, rdfNS['type'], libraryOntology['raw_file'])))
+ RDF.Statement(None,
+ rdfNS['type'],
+ libraryOntology['illumina_result'])))
self.assertEqual(len(files), 5)
files = list(model.find_statements(
self.assertEqual(len(files), 5)
files = list(model.find_statements(
- RDF.Statement(None, rdfNS['type'], libraryOntology['qseq'])))
+ RDF.Statement(None,
+ libraryOntology['file_type'],
+ libraryOntology['qseq'])))
self.assertEqual(len(files), 4)
files = list(model.find_statements(
self.assertEqual(len(files), 4)
files = list(model.find_statements(
- RDF.Statement(None, rdfNS['type'], libraryOntology['split_fastq'])))
+ RDF.Statement(None,
+ libraryOntology['file_type'],
+ libraryOntology['split_fastq'])))
self.assertEqual(len(files), 1)
files = list(model.find_statements(
self.assertEqual(len(files), 1)
files = list(model.find_statements(