#!/usr/bin/env python
+from __future__ import print_function, unicode_literals
+
from ConfigParser import SafeConfigParser
import fnmatch
from glob import glob
import os
from pprint import pprint, pformat
import shlex
-from StringIO import StringIO
+from six.moves import StringIO
import stat
import sys
import time
mapper.link_daf(results)
if opts.fastq:
- extractor = CondorFastqExtract(opts.host, apidata, opts.sequence,
+ flowcells = os.path.join(opts.sequence, 'flowcells')
+ extractor = CondorFastqExtract(opts.host, flowcells,
force=opts.force)
extractor.create_scripts(results)
if opts.print_rdf:
writer = get_serializer()
- print writer.serialize_model_to_string(model)
+ print(writer.serialize_model_to_string(model))
def make_parser():