Use flowcell model information to estimate how long it will take to run the flowcell.

[htsworkflow.git] / htsworkflow / frontend / experiments / test_experiments.py

diff --git a/htsworkflow/frontend/experiments/test_experiments.py b/htsworkflow/frontend/experiments/test_experiments.py
index 11214b1163ad4fb2a4b6a7de1879cc8095847a97..4a665e1222e5ab1e625cbee44b3e2f5f88985d97 100644 (file)
--- a/htsworkflow/frontend/experiments/test_experiments.py
+++ b/htsworkflow/frontend/experiments/test_experiments.py
@@ -4,6 +4,7 @@ try:
     import json
 except ImportError, e:
     import simplejson as json
+from datetime import timedelta
 import os
 import shutil
 import sys
@@ -31,7 +32,8 @@ NSMAP = {'libns':'http://jumpgate.caltech.edu/wiki/LibraryOntology#'}
 from django.db import connection
 
 class ClusterStationTestCases(TestCase):
-    fixtures = ['test_flowcells.json']
+    fixtures = ['initial_data.json',
+                'test_flowcells.json']
 
     def test_default(self):
         c = models.ClusterStation.default()
@@ -79,7 +81,8 @@ class ClusterStationTestCases(TestCase):
 
 
 class SequencerTestCases(TestCase):
-    fixtures = ['test_flowcells.json']
+    fixtures = ['initial_data.json',
+                'test_flowcells.json']
 
     def test_default(self):
         # starting with no default
@@ -131,7 +134,8 @@ class SequencerTestCases(TestCase):
 
 
 class ExperimentsTestCases(TestCase):
-    fixtures = ['test_flowcells.json',
+    fixtures = ['initial_data.json',
+                'test_flowcells.json',
                 ]
 
     def setUp(self):
@@ -288,8 +292,8 @@ class ExperimentsTestCases(TestCase):
         tree = fromstring(response.content)
         flowcell_spans = tree.xpath('//span[@property="libns:flowcell_id"]',
                                     namespaces=NSMAP)
-        self.assertEqual(flowcell_spans[0].text, '30012AAXX (failed)')
-        failed_fc_span = flowcell_spans[0]
+        self.assertEqual(flowcell_spans[1].text, '30012AAXX (failed)')
+        failed_fc_span = flowcell_spans[1]
         failed_fc_a = failed_fc_span.getparent()
         # make sure some of our RDF made it.
         self.assertEqual(failed_fc_a.get('typeof'), 'libns:IlluminaFlowcell')
@@ -478,8 +482,31 @@ class ExperimentsTestCases(TestCase):
             self.assertTrue(library_id in expected[lane_id])
         self.assertEqual(count, 10)
 
+    def test_flowcell_estimates(self):
+        classic_flowcell = models.FlowCell.objects.get(pk=153)
+        classic_mid = experiments.estimateFlowcellDuration(classic_flowcell)
+
+        self.assertEqual(classic_mid, timedelta(4, 44000))
+
+        rapid_flowcell = models.FlowCell.objects.get(pk=300)
+        rapid_mid = experiments.estimateFlowcellDuration(rapid_flowcell)
+        self.assertEqual(rapid_mid, timedelta(seconds=60800))
+
+    def test_round_to_days(self):
+        data = [
+            [timedelta(2, 12345), (timedelta(days=2), timedelta(days=3))],
+            [timedelta(0, 345), (timedelta(days=0), timedelta(days=1))],
+        ]
+
+        for estimate, expected in data:
+            rounded = experiments.roundToDays(estimate)
+            self.assertEqual(rounded, expected)
 
 class TestFileType(TestCase):
+    fixtures = ['initial_data.json',
+                'test_flowcells.json',
+                ]
+
     def test_file_type_unicode(self):
         file_type_objects = models.FileType.objects
         name = 'QSEQ tarfile'
@@ -538,7 +565,8 @@ class TestFileType(TestCase):
             self.assertEqual(result.get('end', None), end)
 
 class TestEmailNotify(TestCase):
-    fixtures = ['test_flowcells.json']
+    fixtures = ['initial_data.json',
+                'test_flowcells.json']
 
     def test_started_email_not_logged_in(self):
         response = self.client.get('/experiments/started/153/')
@@ -588,7 +616,8 @@ def multi_lane_to_dict(lane):
     return dict( ((x['library_id'],x) for x in lane) )
 
 class TestSequencer(TestCase):
-    fixtures = ['test_flowcells.json',
+    fixtures = ['initial_data.json',
+                'test_flowcells.json',
                 ]
 
     def test_name_generation(self):