# Create your views here.
+from datetime import datetime
+import os
+
#from django.template import Context, loader
#shortcut to the above modules
from django.contrib.auth.decorators import user_passes_test
+from django.conf import settings
from django.core.exceptions import ObjectDoesNotExist
from django.core.mail import EmailMessage, mail_managers
from django.http import HttpResponse
from django.shortcuts import render_to_response, get_object_or_404
-from django.template import Context
+from django.template import RequestContext
from django.template.loader import get_template
-from htsworkflow.frontend.experiments.models import *
+from htsworkflow.frontend.experiments.models import DataRun, DataFile, FlowCell
from htsworkflow.frontend.experiments.experiments import \
estimateFlowcellDuration, \
- makeUserLaneMap
+ estimateFlowcellTimeRemaining, \
+ roundToDays, \
+ getUsersForFlowcell, \
+ makeEmailLaneMap
def index(request):
all_runs = DataRun.objects.order_by('-run_start_time')
else:
bcc_managers = False
- user_lane = makeUserLaneMap(fc)
- estimate_low, estimate_high = estimateFlowcellDuration(fc)
+ email_lane = makeEmailLaneMap(fc)
+ flowcell_users = getUsersForFlowcell(fc)
+ estimate = estimateFlowcellTimeRemaining(fc)
+ estimate_low, estimate_high = roundToDays(estimate)
email_verify = get_template('experiments/email_preview.html')
- email_template = get_template('experiments/started_email.html')
+ email_template = get_template('experiments/started_email.txt')
sender = settings.NOTIFICATION_SENDER
warnings = []
emails = []
+
+ emailless_users = []
+ for user in flowcell_users:
+ # provide warning
+ if user.email is None or len(user.email) == 0:
+ warnings.append((user.admin_url(), user.username))
+ user=None
- for user in user_lane.keys():
+ for user_email in email_lane.keys():
sending = ""
# build body
- context = Context({u'flowcell': fc,
- u'lanes': user_lane[user],
- u'runfolder': 'blank',
- u'finish_low': estimate_low,
- u'finish_high': estimate_high,
- u'user_admin': user.admin_url(),
- })
+ context = RequestContext(request,
+ {u'flowcell': fc,
+ u'lanes': email_lane[user_email],
+ u'runfolder': 'blank',
+ u'finish_low': estimate_low,
+ u'finish_high': estimate_high,
+ u'now': datetime.now(),
+ })
# build view
- subject = "Flowcell %s" % ( fc.flowcell_id )
+ subject = "Flowcell %s" % ( fc.flowcell_id )
body = email_template.render(context)
- # provide warning
- has_email = True
- if user.email is None or len(user.email) == 0:
- warnings.append((user.admin_url(), user.username))
- has_email = False
-
if send:
- if has_email:
- email = EmailMessage(subject, body, sender, to=[user.email])
- if bcc_managers:
- print 'bcc_managers', bcc_managers
- email.bcc = settings.MANAGERS
- print email.to, email.bcc
- email.send()
- sending = "sent"
- else:
- print settings.MANAGERS
- mail_managers("Couldn't send to "+user.username, body)
- sending = "bounced to managers"
-
- emails.append((user.email, subject, body, sending))
-
- verify_context = Context({
- 'send': send,
- 'warnings': warnings,
- 'emails': emails,
- 'from': sender,
+ email = EmailMessage(subject, body, sender, to=[user_email])
+ if bcc_managers:
+ email.bcc = settings.MANAGERS
+ email.bcc.append(settings.NOTIFICATION_BCC)
+ email.send()
+
+ emails.append((user_email, subject, body, sending))
+
+ verify_context = RequestContext(
+ request,
+ { 'emails': emails,
+ 'flowcell': fc,
+ 'from': sender,
+ 'send': send,
+ 'site_managers': settings.MANAGERS,
+ 'title': fc.flowcell_id,
+ 'warnings': warnings,
})
return HttpResponse(email_verify.render(verify_context))
"""
"""
return HttpResponse("I've got nothing.")
+
+
+def flowcell_detail(request, flowcell_id):
+ fc = get_object_or_404(FlowCell, flowcell_id__startswith=flowcell_id)
+ fc.update_data_runs()
+
+ context = RequestContext(request,
+ {'flowcell': fc})
+
+ return render_to_response('experiments/flowcell_detail.html',
+ context)
+
+def flowcell_lane_detail(request, flowcell_id, lane_number):
+ fc = get_object_or_404(FlowCell, flowcell_id__startswith=flowcell_id)
+ lane = get_object_or_404(fc.lane_set, lane_number=lane_number)
+
+ fc.update_data_runs()
+
+ context = RequestContext(request,
+ {'lib': lane.library,
+ 'lane': lane,
+ 'flowcell': fc})
+
+ return render_to_response('experiments/flowcell_lane_detail.html',
+ context)
+
+def read_result_file(self, key):
+ """Return the contents of filename if everything is approved
+ """
+ data_file = get_object_or_404(DataFile, random_key = key)
+
+ mimetype = 'application/octet-stream'
+ if data_file.file_type.mimetype is not None:
+ mimetype = data_file.file_type.mimetype
+
+ if os.path.exists(data_file.pathname):
+ return HttpResponse(open(data_file.pathname,'r'),
+ mimetype=mimetype)
+
+ raise Http404
+
+
projects / htsworkflow.git / blobdiff