Add a few more records for django db initial_data.json.

[htsworkflow.git] / htsworkflow / frontend / samples / fixtures / initial_data.json

diff --git a/htsworkflow/frontend/samples/fixtures/initial_data.json b/htsworkflow/frontend/samples/fixtures/initial_data.json
index dbdcc7a27049b40371c285314c3ff4034b99693f..ae22c1df6084f6657a610ba97d623a0b993988bb 100644 (file)
--- a/htsworkflow/frontend/samples/fixtures/initial_data.json
+++ b/htsworkflow/frontend/samples/fixtures/initial_data.json
@@ -4,15 +4,15 @@
      "pk": 1,
      "fields": {
         "cellline_name": "Unknown",
-        "notes": "Unknown"    
+        "notes": "Unknown"
      }
   },
   {
      "model": "samples.Cellline",
      "pk": 2,
      "fields": {
-        "cellline_name": "C2C12 Exponential",
-        "notes": ""    
+        "cellline_name": "C2C12",
+        "notes": ""
      }
   },
   {
@@ -20,21 +20,68 @@
      "pk": 3,
      "fields": {
         "cellline_name": "C2C12 60 hrs",
-        "notes": "Unknown"    
+        "notes": "Unknown"
      }
   },
+  { "pk": 1, "model": "samples.Condition",
+    "fields": {
+        "condition_name": "Unknown",
+        "nickname": "",
+        "notes": "Unknown"
+    }
+  },
   {
      "model": "samples.LibraryType",
      "pk": 1,
      "fields": {
-        "name": "Single End"
+        "name": "Single End (non-multiplexed)",
+        "can_multiplex": false,
+        "is_paired_end": false
      }
   },
   {
      "model": "samples.LibraryType",
      "pk": 2,
      "fields": {
-        "name": "Paired End"
+        "name": "Paired End (non-multiplexed)",
+        "can_multiplex": false,
+        "is_paired_end": true
+     }
+  },
+  {
+     "model": "samples.LibraryType",
+     "pk": 5,
+     "fields": {
+        "name": "Barcoded Illumina",
+        "can_multiplex": true,
+        "is_paired_end": true
+     }
+  },
+  {
+     "model": "samples.LibraryType",
+     "pk": 7,
+     "fields": {
+        "name": "Barcoded Small RNA",
+        "can_multiplex": true,
+        "is_paired_end": true
+     }
+  },
+  {
+     "model": "samples.LibraryType",
+     "pk": 8,
+     "fields": {
+        "name": "Nextera",
+        "can_multiplex": true,
+        "is_paired_end": true
+     }
+  },
+  {
+     "model": "samples.LibraryType",
+     "pk": 9,
+     "fields": {
+        "name": "Dual Index Illumina",
+        "can_multiplex": true,
+        "is_paired_end": true
      }
   },
   {
@@ -86,14 +133,6 @@
         "name": "Multiplexed"
      }
   },
-  {
-     "model": "samples.Species",
-     "pk": 1,
-     "fields": {
-        "scientific_name": "Mus musculus",
-        "common_name": "mouse"
-     }
-  },
   {
      "model": "samples.Species",
      "pk": 2,
@@ -110,13 +149,781 @@
         "common_name": ""
      }
   },
+  {
+     "model": "samples.Species",
+     "pk": 6,
+     "fields": {
+        "scientific_name": "Arabidopsis thaliana"
+     }
+  },
   {
      "model": "samples.Species",
      "pk": 8,
      "fields": {
         "scientific_name": "Homo sapiens",
-        "common_name": ""
+        "common_name": "human"
      }
-  }
-
+  },
+  {
+     "model": "samples.Species",
+     "pk": 9,
+     "fields": {
+        "scientific_name": "Mus musculus",
+        "common_name": "mouse"
+     }
+  },
+  {
+     "model": "samples.Species",
+     "pk": 10,
+     "fields": {
+        "scientific_name": "Strongylocentrotus purpuratus"
+     }
+  },
+  {
+    "pk": 1,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 1,
+      "adapter_type": 8,
+      "sequence": "ATCACG"
+    }
+  },
+  {
+    "pk": 2,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 2,
+      "adapter_type": 8,
+      "sequence": "CGATGT"
+    }
+  },
+  {
+    "pk": 3,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 3,
+      "adapter_type": 8,
+      "sequence": "TTAGGC"
+    }
+  },
+  {
+    "pk": 4,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 4,
+      "adapter_type": 8,
+      "sequence": "TGACCA"
+    }
+  },
+  {
+    "pk": 5,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 5,
+      "adapter_type": 8,
+      "sequence": "ACAGTG"
+    }
+  },
+  {
+    "pk": 6,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 6,
+      "adapter_type": 8,
+      "sequence": "GCCAAT"
+    }
+  },
+  {
+    "pk": 7,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 7,
+      "adapter_type": 8,
+      "sequence": "CAGATC"
+    }
+  },
+  {
+    "pk": 8,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 8,
+      "adapter_type": 8,
+      "sequence": "ACTTGA"
+    }
+  },
+  {
+    "pk": 9,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 9,
+      "adapter_type": 8,
+      "sequence": "GATCAG"
+    }
+  },
+  {
+    "pk": 10,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 10,
+      "adapter_type": 8,
+      "sequence": "TAGCTT"
+    }
+  },
+  {
+    "pk": 11,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 11,
+      "adapter_type": 8,
+      "sequence": "GGCTAC"
+    }
+  },
+  {
+    "pk": 12,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 12,
+      "adapter_type": 8,
+      "sequence": "CTTGTA"
+    }
+  },
+  {
+    "pk": 13,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 1,
+      "adapter_type": 7,
+      "sequence": "ATCACG"
+    }
+  },
+  {
+    "pk": 14,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 2,
+      "adapter_type": 7,
+      "sequence": "CGATGT"
+    }
+  },
+  {
+    "pk": 15,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 3,
+      "adapter_type": 7,
+      "sequence": "TTAGGC"
+    }
+  },
+  {
+    "pk": 16,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 4,
+      "adapter_type": 7,
+      "sequence": "TGACCA"
+    }
+  },
+  {
+    "pk": 17,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 5,
+      "adapter_type": 7,
+      "sequence": "ACAGTG"
+    }
+  },
+  {
+    "pk": 18,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 6,
+      "adapter_type": 7,
+      "sequence": "GCCAAT"
+    }
+  },
+  {
+    "pk": 19,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 7,
+      "adapter_type": 7,
+      "sequence": "CAGATC"
+    }
+  },
+  {
+    "pk": 20,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 8,
+      "adapter_type": 7,
+      "sequence": "ACTTGA"
+    }
+  },
+  {
+    "pk": 21,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 9,
+      "adapter_type": 7,
+      "sequence": "GATCAG"
+    }
+  },
+  {
+    "pk": 22,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 10,
+      "adapter_type": 7,
+      "sequence": "TAGCTT"
+    }
+  },
+  {
+    "pk": 23,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 11,
+      "adapter_type": 7,
+      "sequence": "GGCTAC"
+    }
+  },
+  {
+    "pk": 24,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 12,
+      "adapter_type": 7,
+      "sequence": "CTTGTA"
+    }
+  },
+  {
+    "pk": 25,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 13,
+      "adapter_type": 7,
+      "sequence": "AGTCAA"
+    }
+  },
+  {
+    "pk": 26,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 14,
+      "adapter_type": 7,
+      "sequence": "AGTTCC"
+    }
+  },
+  {
+    "pk": 27,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 15,
+      "adapter_type": 7,
+      "sequence": "ATGTCA"
+    }
+  },
+  {
+    "pk": 28,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 16,
+      "adapter_type": 7,
+      "sequence": "CCGTCC"
+    }
+  },
+  {
+    "pk": 29,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 17,
+      "adapter_type": 7,
+      "sequence": "GTAGAG"
+    }
+  },
+  {
+    "pk": 30,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 18,
+      "adapter_type": 7,
+      "sequence": "GTCCGC"
+    }
+  },
+  {
+    "pk": 31,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 19,
+      "adapter_type": 7,
+      "sequence": "GTGAAA"
+    }
+  },
+  {
+    "pk": 32,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 20,
+      "adapter_type": 7,
+      "sequence": "GTGGCC"
+    }
+  },
+  {
+    "pk": 33,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 21,
+      "adapter_type": 7,
+      "sequence": "GTTTCG"
+    }
+  },
+  {
+    "pk": 34,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 22,
+      "adapter_type": 7,
+      "sequence": "CGTACG"
+    }
+  },
+  {
+    "pk": 35,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 23,
+      "adapter_type": 7,
+      "sequence": "GAGTGG"
+    }
+  },
+  {
+    "pk": 36,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 24,
+      "adapter_type": 7,
+      "sequence": "GGTAGC"
+    }
+  },
+  {
+    "pk": 37,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 25,
+      "adapter_type": 7,
+      "sequence": "ACTGAT"
+    }
+  },
+  {
+    "pk": 38,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 26,
+      "adapter_type": 7,
+      "sequence": "ATGAGC"
+    }
+  },
+  {
+    "pk": 39,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 27,
+      "adapter_type": 7,
+      "sequence": "ATTCCT"
+    }
+  },
+  {
+    "pk": 40,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 28,
+      "adapter_type": 7,
+      "sequence": "CAAAAG"
+    }
+  },
+  {
+    "pk": 41,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 29,
+      "adapter_type": 7,
+      "sequence": "CAACTA"
+    }
+  },
+  {
+    "pk": 42,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 30,
+      "adapter_type": 7,
+      "sequence": "CACCGG"
+    }
+  },
+  {
+    "pk": 43,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 31,
+      "adapter_type": 7,
+      "sequence": "CACGAT"
+    }
+  },
+  {
+    "pk": 44,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 32,
+      "adapter_type": 7,
+      "sequence": "CACTCA"
+    }
+  },
+  {
+    "pk": 45,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 33,
+      "adapter_type": 7,
+      "sequence": "CAGGCG"
+    }
+  },
+  {
+    "pk": 46,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 34,
+      "adapter_type": 7,
+      "sequence": "CATGGC"
+    }
+  },
+  {
+    "pk": 47,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 35,
+      "adapter_type": 7,
+      "sequence": "CATTTT"
+    }
+  },
+  {
+    "pk": 48,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 36,
+      "adapter_type": 7,
+      "sequence": "CCAACA"
+    }
+  },
+  {
+    "pk": 49,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 37,
+      "adapter_type": 7,
+      "sequence": "CGGAAT"
+    }
+  },
+  {
+    "pk": 50,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 38,
+      "adapter_type": 7,
+      "sequence": "CTAGCT"
+    }
+  },
+  {
+    "pk": 51,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 39,
+      "adapter_type": 7,
+      "sequence": "CTATAC"
+    }
+  },
+  {
+    "pk": 52,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 40,
+      "adapter_type": 7,
+      "sequence": "CTCAGA"
+    }
+  },
+  {
+    "pk": 53,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 41,
+      "adapter_type": 7,
+      "sequence": "GACGAC"
+    }
+  },
+  {
+    "pk": 54,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 42,
+      "adapter_type": 7,
+      "sequence": "TAATCG"
+    }
+  },
+  {
+    "pk": 55,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 43,
+      "adapter_type": 7,
+      "sequence": "TACAGC"
+    }
+  },
+  {
+    "pk": 56,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 44,
+      "adapter_type": 7,
+      "sequence": "TATAAT"
+    }
+  },
+  {
+    "pk": 57,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 45,
+      "adapter_type": 7,
+      "sequence": "TCATTC"
+    }
+  },
+  {
+    "pk": 58,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 46,
+      "adapter_type": 7,
+      "sequence": "TCCCGA"
+    }
+  },
+  {
+    "pk": 59,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 47,
+      "adapter_type": 7,
+      "sequence": "TCGAAG"
+    }
+  },
+  {
+    "pk": 60,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 48,
+      "adapter_type": 7,
+      "sequence": "TCGGCA"
+    }
+  },
+  {
+    "pk": 61,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 1,
+      "adapter_type": 5,
+      "sequence": "ATCACG"
+    }
+  },
+  {
+    "pk": 62,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 2,
+      "adapter_type": 5,
+      "sequence": "CGATGT"
+    }
+  },
+  {
+    "pk": 63,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 3,
+      "adapter_type": 5,
+      "sequence": "TTAGGC"
+    }
+  },
+  {
+    "pk": 64,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 4,
+      "adapter_type": 5,
+      "sequence": "TGACCA"
+    }
+  },
+  {
+    "pk": 65,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 5,
+      "adapter_type": 5,
+      "sequence": "ACAGTG"
+    }
+  },
+  {
+    "pk": 66,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 6,
+      "adapter_type": 5,
+      "sequence": "GCCAAT"
+    }
+  },
+  {
+    "pk": 67,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 7,
+      "adapter_type": 5,
+      "sequence": "CAGATC"
+    }
+  },
+  {
+    "pk": 68,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 8,
+      "adapter_type": 5,
+      "sequence": "ACTTGA"
+    }
+  },
+  {
+    "pk": 69,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 9,
+      "adapter_type": 5,
+      "sequence": "GATCAG"
+    }
+  },
+  {
+    "pk": 70,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 10,
+      "adapter_type": 5,
+      "sequence": "TAGCTT"
+    }
+  },
+  {
+    "pk": 71,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 11,
+      "adapter_type": 5,
+      "sequence": "GGCTAC"
+    }
+  },
+  {
+    "pk": 72,
+    "model": "samples.MultiplexIndex",
+    "fields": {
+      "multiplex_id": 12,
+      "adapter_type": 5,
+      "sequence": "CTTGTA"
+    }
+  },
+  {"fields": {"adapter_type": 9,
+             "multiplex_id": "N501",
+             "sequence": "TAGATCGC"},
+  "model": "samples.multiplexindex",
+  "pk": 74
+  },
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N502",
+             "sequence": "CTCTCTAT"},
+  "model": "samples.multiplexindex",
+  "pk": 75},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N503",
+             "sequence": "TATCCTCT"},
+  "model": "samples.multiplexindex",
+  "pk": 76},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N504",
+             "sequence": "AGAGTAGA"},
+  "model": "samples.multiplexindex",
+  "pk": 77},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N505",
+             "sequence": "GTAAGGAG"},
+  "model": "samples.multiplexindex",
+  "pk": 78},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N506",
+             "sequence": "ACTGCATA"},
+  "model": "samples.multiplexindex",
+  "pk": 79},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N507",
+             "sequence": "AAGGAGTA"},
+  "model": "samples.multiplexindex",
+  "pk": 80},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N508",
+             "sequence": "CTAAGCCT"},
+  "model": "samples.multiplexindex",
+  "pk": 81},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N701",
+             "sequence": "TAAGGCGA"},
+  "model": "samples.multiplexindex",
+  "pk": 82},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N702",
+             "sequence": "CGTACTAG"},
+  "model": "samples.multiplexindex",
+  "pk": 83},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N703",
+             "sequence": "AGGCAGAA"},
+  "model": "samples.multiplexindex",
+  "pk": 84},
+ {"fields": {"adapter_type": 9, "multiplex_id": "N704", "sequence": "TCCTGA"},
+  "model": "samples.multiplexindex",
+  "pk": 85},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N705",
+             "sequence": "GGACTCCT"},
+  "model": "samples.multiplexindex",
+  "pk": 86},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N706",
+             "sequence": "TAGGCATG"},
+  "model": "samples.multiplexindex",
+  "pk": 87},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N707",
+             "sequence": "CTCTCTAC"},
+  "model": "samples.multiplexindex",
+  "pk": 88},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N708",
+             "sequence": "CAGAGAGG"},
+  "model": "samples.multiplexindex",
+  "pk": 89},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N709",
+             "sequence": "GCTACGCT"},
+  "model": "samples.multiplexindex",
+  "pk": 90},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N710",
+             "sequence": "CGAGGCTG"},
+  "model": "samples.multiplexindex",
+  "pk": 91},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N711",
+             "sequence": "AAGAGGCA"},
+  "model": "samples.multiplexindex",
+  "pk": 92},
+ {"fields": {"adapter_type": 9,
+             "multiplex_id": "N712",
+             "sequence": "GTAGAGGA"},
+  "model": "samples.multiplexindex",
+  "pk": 93}
 ]