{% extends "base_site.html" %}
-{% load adminmedia humanize i18n %}
+{% load humanize i18n %}
{% block extrahead %}
<!-- App Stuff -->
<link type="text/css" rel="stylesheet" href="/static/css/app.css" />
<script type="text/javascript" src="/static/js/jquery.min.js"></script>
-
+
{% block additional_javascript %}
{% endblock %}
{% endblock %}
{% block content %}
-<div id="lane_detail" class="htswdetail">
- <h2>About this lane</h2>
+<div id="lane_detail" class="htswdetail" typeof="libns:IlluminaLane" resource="{{lane.get_absolute_url}}">
<div rel="libns:flowcell" resource="{{flowcell.get_absolute_url}}">
- <b>Flowcell</b>:
- <a href="{{flowcell.get_absolute_url}}">{{flowcell.flowcell_id}}</a><br/>
- <b>Run Date</b>:
- <span property="libns:date" content="{{flowcell.run_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ flowcell.run_date }}</span><br/>
- <b>Type</b>:
- <span property="libns:flowcell_type">{{flowcell.flowcell_type}}</span><br/>
+ {% include "experiments/flowcell_header.html" %}
</div>
- <b>Lane</b>:
- <span property="libns:lane_number" datatype="xsd:decimal">{{lane.lane_number}}</span><br/>
- <b>Cycles</b>:
- <span property="libns:read_length">{{lane.flowcell.read_length}}</span><br/>
- <b>pM</b>
+ <div class="flowcell_lane_detail">
+ <h2>About this lane</h2>
+ <b>Lane</b>:
+ <span property="libns:lane_number">{{lane.lane_number}}</span><br/>
+ <b>pM</b>:
<span property="libns:pM" datatype="xsd:decimal">{{ lane.pM }}</span><br/>
- <b>Cluster Estimate</b>
+ {% if lane.cluster_estimate %}
+ <b>Cluster Estimate</b>:
<span property="libns:cluster_estimate" datatype="xsd:decimal"
- content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>
- <b>Lane Status</b>:
- <span property="libns:status">{{ lane.status }}</span><br/>
- <b>Comment</b>:
- <span property="libns:comment">{{ lane.comment }}</span><br/>
+ content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>{% endif %}
+ {% if lane.status %}
+ <b>Lane Status</b>:
+ <span property="libns:status">{{ lane.status }}</span><br/>{% endif %}
+ {% if lane.comment %}
+ <b>Comments</b>:
+ <span property="libns:comment">{{ lane.comment }}</span><br/>{% endif %}
+ </div>
<hr/>
{% include "sample_header.html" %}
<hr/>
<td>IVC Percent Base</td>
<td>IVC Percent Base All</td>
<td>IVC Percent Base Called</td>
+ </tr>
</thead>
<tbody>
- {% for lane_id, lane_file_set in run.lane_files.items %}
- {% if lane_id == lane.lane_number %}
+ {% for run, lane_number, lane_file_set in filtered_dataruns %}
+ {% if lane_file_set.ivc_all %}
<tr>
- <td>{{lane_id}}</td>
+ <td>{{lane_number}}</td>
<td>
<a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
+ src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
</td>
<td>
<a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
+ src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
+ src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
+ src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
+ <img height="84" width="126"
+ alt="Lane {{lane_id }} IVC % Base Called"
+ src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
</a>
</td>
</tr>
+ {% else %}
+ <tr><td colspan="6">No data</td></tr>
{% endif %}
- {% endfor %}
+ {% endfor %}
</tbody>
</table>
{% endfor %}
</div>
+</div>
+
{% endblock %}