import os
import tempfile
import shutil
-import unittest
+from unittest2 import TestCase
from htsworkflow.pipelines import eland
from htsworkflow.pipelines.samplekey import SampleKey
obj.reads = 2
-class RunfolderTests(unittest.TestCase):
+class RunfolderTests(TestCase):
"""
Test components of the runfolder processing code
which includes firecrest, bustard, and gerald
date.today().strftime('%Y-%m-%d'),)
self.failUnlessEqual(runs[0].name, name)
+ bustard_dir = os.path.join(self.runfolder_dir, 'Unaligned')
r1 = runs[0]
+ self.failUnlessEqual(r1.bustard.sequence_format, 'fastq')
+ self.failUnlessEqual(r1.bustard.pathname, bustard_dir)
+ self.failUnlessEqual(r1.gerald.runfolder_name, 'Unaligned')
+
xml = r1.get_elements()
xml_str = ElementTree.tostring(xml)
self.failIfEqual(r2.bustard, None)
self.failIfEqual(r2.gerald, None)
-
def suite():
- return unittest.makeSuite(RunfolderTests,'test')
+ from unittest2 import TestSuite, defaultTestLoader
+ suite = TestSuite()
+ suite.addTests(defaultTestLoader.loadTestsFromTestCase(RunfolderTests))
+ return suite
-if __name__ == "__main__":
- logging.basicConfig(level=logging.WARN)
- unittest.main(defaultTest="suite")
+if __name__ == "__main__":
+ from unittest2 import main
+ main(defaultTest="suite")