Modify qseq2fastq to also read from compressed tar files containing qseq files

[htsworkflow.git] / scripts / spoolwatcher

diff --git a/scripts/spoolwatcher b/scripts/spoolwatcher
index 96c452fe209b3313361345722f6b7ce29e5b2212..b2f833ee45d7fd9802c8b8f72c30d719676002f9 100644 (file)
--- a/scripts/spoolwatcher
+++ b/scripts/spoolwatcher
@@ -1,10 +1,6 @@
 #!/usr/bin/env python
-
-from gaworkflow.spoolwatcher import TreeWriteDoneNotifier
+import sys
+from htsworkflow.automation.spoolwatcher import main
 
 if __name__ == "__main__":
-  copy_jid = "cellthumper@chaos.caltech.edu"
-  runner_jid = "diane@ghic.org"
-
-  watcher = TreeWriteDoneNotifier("/gec/jumpgate/ext0", copy_jid, runner_jid)
-  watcher.event_loop()
+    sys.exit(main(sys.argv[1:]))