-from setuptools import setup
+from setuptools import setup, find_packages
from version import get_git_version
setup(
description="Utilities to help manage high-through-put sequencing",
author="Diane Trout, Brandon King",
author_email="diane@caltech.edu",
- packages=["htsworkflow",
- "htsworkflow.automation",
- "htsworkflow.pipelines",
- "htsworkflow.util",
- # django site
- "htsworkflow.frontend",
- "htsworkflow.frontend.analysis",
- "htsworkflow.frontend.eland_config",
- "htsworkflow.frontend.experiments",
- "htsworkflow.frontend.inventory",
- "htsworkflow.frontend.reports",
- "htsworkflow.frontend.samples",
- ],
+ packages=find_packages(),
scripts=[
- 'scripts/copier',
- 'scripts/library.py',
- 'scripts/makebed',
- 'scripts/make-library-tree',
- 'scripts/mark_archived_data',
- 'scripts/qseq2fastq',
- 'scripts/retrieve_config',
- 'scripts/runfolder',
- 'scripts/runner',
- 'scripts/spoolwatcher',
- 'scripts/srf',
- 'scripts/srf2fastq'
+ "scripts/htsw-copier",
+ "scripts/htsw-eland2bed",
+ "scripts/htsw-elandseq",
+ "scripts/htsw-gerald2bed",
+ "scripts/htsw-get-config",
+ "scripts/htsw-qseq2fastq",
+ "scripts/htsw-record-runfolder",
+ "scripts/htsw-runfolder",
+ "scripts/htsw-runner",
+ "scripts/htsw-spoolwatcher",
+ "scripts/htsw-srf",
+ "scripts/htsw-srf2fastq",
+ "scripts/htsw-update-archive",
+ "scripts/htsw-validate",
],
+ package_data = {
+ '': ['*.turtle']
+ },
)