from setuptools import setup
setup(
- name="gaworkflow",
+ name="htsworkflow",
description="some bots and other utilities to help deal with data from an illumina sequencer",
author="Diane Trout & Brandon King",
author_email="diane@caltech.edu",
- packages=["gaworkflow",
- "gaworkflow.pipeline",
- "gaworkflow.frontend",
- "gaworkflow.frontend.fctracker",
- "gaworkflow.frontend.eland_config"
+ packages=["htsworkflow",
+ "htsworkflow.pipelines",
+ "htsworkflow.frontend",
+ "htsworkflow.frontend.analysis",
+ "htsworkflow.frontend.eland_config",
+ "htsworkflow.frontend.experiments",
+ "htsworkflow.frontend.inventory",
+ "htsworkflow.frontend.reports",
+ "htsworkflow.frontend.samples",
+ "htsworkflow.automation",
+ "htsworkflow.util"
],
- scripts=['scripts/spoolwatcher',
- 'scripts/copier',
- 'scripts/runner',
- 'scripts/retrieve_config',
- 'scripts/configure_pipeline',
- 'scripts/runfolder.py'],
+ scripts=[
+ 'scripts/configure_pipeline',
+ 'scripts/copier',
+ 'scripts/gerald2bed.py',
+ 'scripts/library.py',
+ 'scripts/makebed',
+ 'scripts/rerun_eland.py',
+ 'scripts/retrieve_config',
+ 'scripts/runfolder',
+ 'scripts/runner',
+ 'scripts/spoolwatcher',
+ 'scripts/srf',
+ 'scripts/mark_archived_data'
+ ],
)