X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=NEWS;h=d23054184048429abbf18fe8dbe3b45446979dc8;hb=bf5a05a0e9e71e0802d8acaf6573cb78982f6f59;hp=8cb7f0dd2d1de74a717fb535056412d04a8fddff;hpb=d1fcb739b58e050328dcfc47c3af235bc0e41455;p=tabix.git diff --git a/NEWS b/NEWS index 8cb7f0d..d230541 100644 --- a/NEWS +++ b/NEWS @@ -1,3 +1,91 @@ +Release 0.2.4 (10 April, 2011) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Notable changes: + + * Give an error if the index file is older than the data file. + + * Avoid a segfault given flawed input. + + * Added Python APIs contributed by Hyeshik Chang. The new APIs do not bind to + the dynamic library and are reported to be faster. Pysam also comes with a + tabix binding. + + * Added option "-r" for efficient header replacement. + + * Added BED support. + + * Synchronized the BGZF library between tabix and samtools. + +(0.2.4: 10 April 2011, r949) + + + +Beta Release 0.2.3 (8 December, 2010) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Notable changes: + + * Fixed a minor bug where the first record in a headerless file may be + missed. + + * Added an option to print header lines. + + * Fixed a rare bug which may occasionally happen when retrieving data + from a region without any records. + + * Enhanced error reporting. + + * Fixed a bug in bgzip which may delete the original file even if not + intended. + +(0.2.3: 8 December 2010, r876) + + + +Beta Release 0.2.2 (28 June, 2010) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Notable changes: + + * Dropped the VCF3 support. Added VCF4 support. + + * Avoided the function name collision with samtools. + +(0.2.2: 28 June 2010, r603) + + + +Beta Release 0.2.1 (3 June, 2010) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Notable changes: + + * Allow shared library to be compiled. Added python binding to the + shared library. + +(0.2.1: 3 June 2010, r582) + + + +Beta Release 0.2.0 (11 May, 2010) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Notable changes: + + * Fixed an issue for random access given an interval end larger than + 2^29. + + * Updated the Java binding. + + * Added a Perl module using XS. + + * Improved the C APIs. + +(0.2.0: 11 May 2010, r574) + + + Beta Release 0.1.6 (9 May, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~