X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=alg%2FCMakeLists.txt;h=9963d64542b3f4a549e3a1d6a249e6ef5a3a2d11;hb=6d25d4d945af696134bdf788b111f38b197b1a15;hp=5d36611b1abd464b006234ede090853714be18d6;hpb=6b3a5c1fd297ad97ab27feac6ec36b61e8c88621;p=mussa.git

diff --git a/alg/CMakeLists.txt b/alg/CMakeLists.txt
index 5d36611..9963d64 100644
--- a/alg/CMakeLists.txt
+++ b/alg/CMakeLists.txt
@@ -10,18 +10,24 @@ SET(MOC_HEADERS
    )
 QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})
 
-SET(SOURCES annotation_colors.cpp 
+SET(SOURCES alphabet.cpp
+            annotations.cpp
+            annotation_colors.cpp 
             color.cpp 
             conserved_path.cpp 
             flp.cpp 
             flp_seqcomp.cpp 
             glseqbrowser.cpp 
             glsequence.cpp 
+            io.cpp
             mussa.cpp 
+            motif_parser.cpp 
             nway_entropy.cpp
             nway_other.cpp 
             nway_paths.cpp
             parse_options.cpp 
+            seq.cpp
+            seq_span.cpp
             sequence.cpp
             sequence_location.cpp )
 
@@ -36,11 +42,8 @@ SET_SOURCE_FILES_PROPERTIES(
 ADD_LIBRARY( mussa_core STATIC ${SOURCES} ${MOC_SOURCES})
 INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR}
                     ${BOOST_INCLUDE_DIR}
-                    ${QT_INCLUDES})
-
-TARGET_LINK_LIBRARIES(mussa_core 
-                        ${OPEN_gl_LIBRARY}
-                        ${QT_LIBRARIES})
+                    ${QT_INCLUDES}
+                    ${CMAKE_CURRENT_SOURCE_DIR})
 
 SET_TARGET_PROPERTIES(
   mussa_core PROPERTIES