X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=gaworkflow%2Ffrontend%2Feland_config%2Fviews.py;h=f23f7aee55c2723e8f16dcd9e7f6dbdbac744362;hb=a11f8ed00a141c6217b258d334fa67aa30ed08e0;hp=61757182013b9f13f71ffa9a3c8340a94b9a9a30;hpb=d8a9162e013960de7c5c1ea010f559b32f3b94f5;p=htsworkflow.git diff --git a/gaworkflow/frontend/eland_config/views.py b/gaworkflow/frontend/eland_config/views.py index 6175718..f23f7ae 100644 --- a/gaworkflow/frontend/eland_config/views.py +++ b/gaworkflow/frontend/eland_config/views.py @@ -316,29 +316,29 @@ def getElandConfig(flowcell, regenerate=False): genome_dict = {} #l1s = form['lane1_species'] - l1s = fcObj.lane_1_library.library_species.scientific_name + '|' + \ - fcObj.lane_1_library.library_species.use_genome_build + l1s = fcObj.lane_1_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_1_library.library_species.use_genome_build genome_dict.setdefault(l1s, []).append('1') - l2s = fcObj.lane_2_library.library_species.scientific_name + '|' + \ - fcObj.lane_2_library.library_species.use_genome_build + l2s = fcObj.lane_2_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_2_library.library_species.use_genome_build genome_dict.setdefault(l2s, []).append('2') - l3s = fcObj.lane_3_library.library_species.scientific_name + '|' + \ - fcObj.lane_3_library.library_species.use_genome_build + l3s = fcObj.lane_3_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_3_library.library_species.use_genome_build genome_dict.setdefault(l3s, []).append('3') - l4s = fcObj.lane_4_library.library_species.scientific_name + '|' + \ - fcObj.lane_4_library.library_species.use_genome_build + l4s = fcObj.lane_4_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_4_library.library_species.use_genome_build genome_dict.setdefault(l4s, []).append('4') - l5s = fcObj.lane_5_library.library_species.scientific_name + '|' + \ - fcObj.lane_5_library.library_species.use_genome_build + l5s = fcObj.lane_5_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_5_library.library_species.use_genome_build genome_dict.setdefault(l5s, []).append('5') - l6s = fcObj.lane_6_library.library_species.scientific_name + '|' + \ - fcObj.lane_6_library.library_species.use_genome_build + l6s = fcObj.lane_6_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_6_library.library_species.use_genome_build genome_dict.setdefault(l6s, []).append('6') - l7s = fcObj.lane_7_library.library_species.scientific_name + '|' + \ - fcObj.lane_7_library.library_species.use_genome_build + l7s = fcObj.lane_7_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_7_library.library_species.use_genome_build genome_dict.setdefault(l7s, []).append('7') - l8s = fcObj.lane_8_library.library_species.scientific_name + '|' + \ - fcObj.lane_8_library.library_species.use_genome_build + l8s = fcObj.lane_8_library.library_species.scientific_name #+ '|' + \ + #fcObj.lane_8_library.library_species.use_genome_build genome_dict.setdefault(l8s, []).append('8') genome_list = genome_dict.keys()