X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=htsworkflow%2Ffrontend%2Fsamples%2Ffixtures%2Ftest_samples.json;h=41824e065a149215bfaf5d656cc2f23ae9576f94;hb=ab74b21a3c45abc940a2154e584a01089c910cbe;hp=dba08b6626de4185298f4826a8834b6a9a3cac9d;hpb=c077be894e37342f0f4437afd60859a7fe2f80d3;p=htsworkflow.git diff --git a/htsworkflow/frontend/samples/fixtures/test_samples.json b/htsworkflow/frontend/samples/fixtures/test_samples.json index dba08b6..41824e0 100644 --- a/htsworkflow/frontend/samples/fixtures/test_samples.json +++ b/htsworkflow/frontend/samples/fixtures/test_samples.json @@ -1,5 +1,5 @@ [ - {"pk": 5, "model": "auth.user", + {"pk": 5, "model": "auth.user", "fields": { "username": "test", "first_name": "", @@ -7,131 +7,228 @@ "is_active": true, "is_superuser": false, "is_staff": false, - "last_login": "2009-01-01 00:00:01", + "last_login": "2009-01-01T00:00:01-0800", "groups": [], "user_permissions": [], "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345", "email": "", - "date_joined": "2009-01-01 00:01:01" + "date_joined": "2009-01-01T00:01:01-0800" } }, - {"pk": 10984, "model": "samples.library", + {"pk": 1, "model": "samples.affiliation", + "fields": { + "users": [5], + "name": "Alice", + "contact": "Lab Boss", + "email": "alice@some.where.else." + } + }, + {"pk": 2, "model": "samples.affiliation", + "fields": { "name": "Bob", + "contact": "Other Lab Boss", + "email": "bob@some.where.else" + } + }, + {"pk": 3, "model": "samples.affiliation", + "fields": { + "users": [], + "contact": "group 3", + "name": "affiliation 3", + "email": "pk3@example.com" + } + }, + {"pk": 4, "model": "samples.affiliation", + "fields": { + "users": [], + "contact": "group 4", + "name": "affiliation 4", + "email": "pk1@example.com" + } + }, + {"pk": 5, "model": "samples.affiliation", + "fields": { + "users": [], + "contact": "group 5", + "name": "affiliation 5", + "email": "pk5@example.com" + } + }, + {"pk": 153, "model": "experiments.flowcell", + "fields": { + "paired_end": true, + "run_date": "2009-09-11T22:12:13-0800", + "read_length": 75, + "notes": "", + "advanced_run": false, + "control_lane": 2, + "cluster_station": 3, + "sequencer": 2, + "flowcell_id": "303TUAAXX" + } + }, + {"pk": 1193, "model": "experiments.lane", + "fields": { + "comment": "No change in cluster numbers, despite slight increase in pM", + "library": "10981", + "cluster_estimate": 129000, + "flowcell": 153, + "lane_number": 1, + "pM": "8" + } + }, + {"pk": 1197, "model": "experiments.lane", + "fields": { + "comment": "stuff", + "library": "11016", + "cluster_estimate": 140000, + "flowcell": 153, + "lane_number": 5, + "pM": "7", + "status": 2 + } + }, + {"pk": "10981", "model": "samples.library", "fields": { - "library_id": "10981", - "ten_nM_dilution": false, - "avg_lib_size": 400, - "library_name": "Paired End Multiplexed Sp-BAC", - "creation_date": "2009-07-21", - "cell_line": 1, - "library_species": 2, - "library_type": null, - "made_by": "Igor", + "ten_nM_dilution": false, + "gel_cut_size": 400, + "library_name": "Paired End Multiplexed Sp-BAC", + "creation_date": "2009-07-21", + "cell_line": 1, + "library_species": 2, + "library_type": null, + "made_by": "Igor", "affiliations": [ - 40 - ], - "replicate": 1, - "condition": 1, - "hidden": false, - "stopping_point": "Done", - "tags": [], - "made_for": "Andy Cameron", - "amplified_from_sample": null, - "notes": "Combined 10957-10968", - "undiluted_concentration": "5.1", - "successful_pM": null, - "experiment_type": 10, + 2 + ], + "replicate": 1, + "condition": 1, + "hidden": false, + "stopping_point": "Done", + "tags": [], + "made_for": "Andy Cameron", + "amplified_from_sample": null, + "notes": "Combined 10957-10968", + "undiluted_concentration": "5.1", + "successful_pM": null, + "experiment_type": 10, "antibody": null } - }, + }, + { + "pk": "11016", + "model": "samples.library", + "fields": { + "ten_nM_dilution": false, + "gel_cut_size": 325, + "library_name": "Paired End Pfl #3 MP 7/24/9 a", + "creation_date": "2009-08-06", + "cell_line": 1, + "library_species": 9, + "library_type": 2, + "made_by": "Lorian", + "affiliations": [ + 3 + ], + "replicate": 1, + "condition": 1, + "hidden": false, + "stopping_point": "1Aa", + "tags": [], + "made_for": "", + "amplified_from_sample": "11003", + "notes": "7/31/2009 16:08:22\tColor: Blue", + "undiluted_concentration": "35.5", + "successful_pM": null, + "experiment_type": 8, + "antibody": null + } + }, { - "pk": 11019, - "model": "samples.library", + "pk": "11039", + "model": "samples.library", "fields": { - "library_id": "11016", - "ten_nM_dilution": false, - "avg_lib_size": 325, - "library_name": "Paired End Pfl #3 MP 7/24/9 a", - "creation_date": "2009-08-06", - "cell_line": 1, - "library_species": 1, - "library_type": 2, - "made_by": "Lorian", + "ten_nM_dilution": false, + "gel_cut_size": 300, + "library_name": "Paired ends 99 GM12892", + "creation_date": "2009-08-25", + "cell_line": 1, + "library_species": 8, + "library_type": 2, + "made_by": "Brian Williams", "affiliations": [ - 41 - ], - "replicate": 1, - "condition": 1, - "hidden": false, - "stopping_point": "1Aa", - "tags": [], - "made_for": "", - "amplified_from_sample": 11006, - "notes": "7/31/2009 16:08:22\tColor: Blue", - "undiluted_concentration": "35.5", - "successful_pM": null, - "experiment_type": 8, + 1, + 2, + 4 + ], + "replicate": 1, + "condition": 1, + "hidden": false, + "stopping_point": "1Aa", + "tags": [], + "made_for": "Brian Williams", + "amplified_from_sample": null, + "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 56.3", + "undiluted_concentration": "28.7", + "successful_pM": null, + "experiment_type": 4, "antibody": null } - }, + }, { - "pk": 11042, - "model": "samples.library", + "pk": "11003", + "model": "samples.library", "fields": { - "library_id": "11039", - "ten_nM_dilution": false, - "avg_lib_size": 300, - "library_name": "Paired ends 99 GM12892", - "creation_date": "2009-08-25", - "cell_line": 1, - "library_species": 8, - "library_type": 2, - "made_by": "Brian Williams", + "ten_nM_dilution": false, + "gel_cut_size": 325, + "library_name": "Paired End Pfl #3 MP 7/24/9", + "creation_date": "2009-08-05", + "cell_line": 1, + "library_species": 8, + "library_type": 2, + "made_by": "Lorian", "affiliations": [ - 4, - 8, - 12 - ], - "replicate": 1, - "condition": 1, - "hidden": false, - "stopping_point": "1Aa", - "tags": [], - "made_for": "Brian Williams", - "amplified_from_sample": null, - "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 56.3", - "undiluted_concentration": "28.7", - "successful_pM": null, - "experiment_type": 4, + 4 + ], + "replicate": 1, + "condition": 1, + "hidden": true, + "stopping_point": "1A", + "tags": [], + "made_for": "", + "amplified_from_sample": null, + "notes": "7/31/2009 16:08:22\tColor: Blue", + "undiluted_concentration": null, + "successful_pM": null, + "experiment_type": 8, "antibody": null } }, { - "pk": 11006, - "model": "samples.library", + "pk": "11005", + "model": "samples.library", "fields": { - "library_id": "11003", - "ten_nM_dilution": false, - "avg_lib_size": 325, - "library_name": "Paired End Pfl #3 MP 7/24/9", - "creation_date": "2009-08-05", - "cell_line": 1, - "library_species": 1, - "library_type": 2, - "made_by": "Lorian", + "ten_nM_dilution": false, + "gel_cut_size": 325, + "library_name": "null cell line", + "creation_date": "2009-08-05", + "cell_line": null, + "library_species": 8, + "library_type": 2, + "made_by": "Lorian", "affiliations": [ - 41 - ], - "replicate": 1, - "condition": 1, - "hidden": true, - "stopping_point": "1A", - "tags": [], - "made_for": "", - "amplified_from_sample": null, - "notes": "7/31/2009 16:08:22\tColor: Blue", - "undiluted_concentration": null, - "successful_pM": null, - "experiment_type": 8, + 4 + ], + "replicate": 1, + "condition": 1, + "hidden": true, + "stopping_point": "1A", + "tags": [], + "made_for": "", + "amplified_from_sample": null, + "notes": "7/31/2009 16:08:22\tColor: Blue", + "undiluted_concentration": null, + "successful_pM": null, + "experiment_type": 8, "antibody": null } }