X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=htsworkflow%2Ffrontend%2Fsamples%2Fviews.py;h=e50b5b357c2caa1b88d73cb2f2884cf0124f6158;hb=4a2529df5d2bdaa83d1661730c3791560d58df37;hp=7150d081bd64b7fd73bb119b23ca539b38419035;hpb=abfa5301e72411867a9dc819c6ba02a0cb9e8d08;p=htsworkflow.git diff --git a/htsworkflow/frontend/samples/views.py b/htsworkflow/frontend/samples/views.py index 7150d08..e50b5b3 100644 --- a/htsworkflow/frontend/samples/views.py +++ b/htsworkflow/frontend/samples/views.py @@ -296,6 +296,10 @@ def _summary_stats(flowcell_id, lane_id, library_id): continue run = load_pipeline_run_xml(xmlpath) + # skip if we don't have available metadata. + if run.gerald is None or run.gerald.summary is None: + continue + gerald_summary = run.gerald.summary.lane_results key = SampleKey(lane=lane_id, sample='s') eland_results = list(run.gerald.eland_results.find_keys(key))