X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=qui%2Fmotif_editor%2FMotifElement.cpp;h=89308c72858d3ece99caf974a204c79519e7ca9a;hb=5288827708ab8f91f1ed49c8d7d548ec7d07ce79;hp=5bbda0ec43f87750c4a0326275e96d88c660d72b;hpb=45b97b8f97ed41a8ba127742f1cc417673f95e11;p=mussa.git

diff --git a/qui/motif_editor/MotifElement.cpp b/qui/motif_editor/MotifElement.cpp
index 5bbda0e..89308c7 100644
--- a/qui/motif_editor/MotifElement.cpp
+++ b/qui/motif_editor/MotifElement.cpp
@@ -1,11 +1,12 @@
 #include "qui/motif_editor/MotifEditor.hpp"
+#include "alg/alphabet.hpp"
 
 #include <iostream>
 
 MotifElement::MotifElement() :
   enabled(true),
   color(Color(1.0,0.0,0.0,1.0)),
-  motif()
+  motif(Sequence::nucleic_alphabet)
 {
 }
 
@@ -76,7 +77,7 @@ void MotifElement::setSequence(const Sequence& seq)
 //! set sequence text
 void MotifElement::setSequence(const std::string& seq_text)
 {
-  motif.set_sequence(seq_text);
+  motif.set_sequence(seq_text, Sequence::nucleic_alphabet);
 }
 
 QString MotifElement::getSequenceText() const
@@ -94,4 +95,4 @@ std::string MotifElement::getName() const
 void MotifElement::setName(const std::string& seq_name)
 {
   motif.set_fasta_header(seq_name);
-}
\ No newline at end of file
+}