X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=qui%2Fmussa_setup_dialog%2FMussaSetupWidget.cpp;h=c116a9a2e12fc6e9983760a6f80f83906cd69961;hb=4c1d1e263deea85ab00823282c5ca5fc00fa8c26;hp=bef824470e1574da7372e83841c570d70f3c1523;hpb=aec6ce233d2f386dff16e1be202ebdb5c5b813dc;p=mussa.git

diff --git a/qui/mussa_setup_dialog/MussaSetupWidget.cpp b/qui/mussa_setup_dialog/MussaSetupWidget.cpp
index bef8244..c116a9a 100644
--- a/qui/mussa_setup_dialog/MussaSetupWidget.cpp
+++ b/qui/mussa_setup_dialog/MussaSetupWidget.cpp
@@ -30,30 +30,44 @@ MussaSetupWidget::MussaSetupWidget(QWidget *parent)
     cancelPushButton(new QPushButton(tr("Cancel"))),
     seqSetupFrame(0)
 {
-  
+  analysisNameLineEdit = new QLineEdit;
+  windowEdit = new QSpinBox;
+  thresholdEdit = new QSpinBox;
+  numOfSequencesSpinBox = new QSpinBox;
+  createPushButton = new QPushButton(tr("Create"));
+  cancelPushButton = new QPushButton(tr("Cancel"));
+    
   // Analysis name
   QLabel *analysisNameLabel = new QLabel(tr("Analysis Name"));
   analysisNameLabel->setBuddy(analysisNameLineEdit);
+  analysisNameLabel->setWhatsThis("Meaningful name for your analysis ");
+  analysisNameLineEdit->setWhatsThis("Meaningful name for your analysis ");
 
   // Window
   windowEdit->setMinimum(1);
   windowEdit->setValue(30);
+  windowEdit->setWhatsThis("Sliding window size to use in analysis.\n\nSee Mussagl Manual for more information by selecting the 'Help > Mussagl Manual' menu option. ");
   QLabel *windowLabel = new QLabel(tr("Window (nt)"));
   windowLabel->setBuddy(windowEdit);
+  windowLabel->setWhatsThis("Sliding window size to use in analysis.\n\nSee Mussagl Manual for more information by selecting the 'Help > Mussagl Manual' menu option. ");
 
   // Threshold
   thresholdEdit->setMinimum(1);
   thresholdEdit->setMaximum(windowEdit->value());
   thresholdEdit->setValue(21);
+  thresholdEdit->setWhatsThis("Threshold of minimum number of matches required in a window to be considered a match.\n\nSee Mussagl Manual for more information by selecting the 'Help > Mussagl Manual' menu option. ");
   QLabel *thresholdLabel = new QLabel(tr("Threshold (nt)"));
   thresholdLabel->setBuddy(thresholdEdit);
+  thresholdLabel->setWhatsThis("Threshold of minimum number of matches required in a window to be considered a match.\n\nSee Mussagl Manual for more information by selecting the 'Help > Mussagl Manual' menu option. ");
   connect(windowEdit, SIGNAL(valueChanged(int)),
           this, SLOT(updateThreshold(int)));
 
   // Number of sequences
   QLabel *numOfSequencesLabel = new QLabel(tr("Number of sequences"));
   numOfSequencesLabel->setBuddy(numOfSequencesSpinBox);
+  numOfSequencesLabel->setWhatsThis("Number of sequences to include in analysis. ");
   numOfSequencesSpinBox->setMinimum(1);
+  numOfSequencesSpinBox->setWhatsThis("Number of sequences to include in analysis. ");
 
   //Sequence setup frame
   seqSetupFrame = new SequenceSetupFrame;
@@ -115,7 +129,7 @@ void MussaSetupWidget::updateThreshold(int new_threshold)
 
 MussaRef MussaSetupWidget::getMussaObject()
 {
-  MussaRef mussa(new Mussa);
+  MussaRef mussa = Mussa::init();
 
   int fastaIndex;
   int start;