X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=samtools%2Fbam_maqcns.h;h=291ae533c3c38cd152b3c9c8fa8e820386a3718d;hb=e1756c41e7a1d7cc01fb95e42df9dd04da2d2991;hp=6cc5355fc2db2b1b19e6a3d2d330306a240fa15a;hpb=6a7c3f175b210cc16d09a5e8e4c1d47333dbe1c6;p=pysam.git

diff --git a/samtools/bam_maqcns.h b/samtools/bam_maqcns.h
index 6cc5355..291ae53 100644
--- a/samtools/bam_maqcns.h
+++ b/samtools/bam_maqcns.h
@@ -3,11 +3,15 @@
 
 #include "glf.h"
 
+#define BAM_ERRMOD_MAQ2 0
+#define BAM_ERRMOD_MAQ  1
+#define BAM_ERRMOD_SOAP 2
+
 struct __bmc_aux_t;
 
 typedef struct {
 	float het_rate, theta;
-	int n_hap, cap_mapQ, is_soap;
+	int n_hap, cap_mapQ, errmod, min_baseQ;
 
 	float eta, q_r;
 	double *fk, *coef;