X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=scripts%2Fsrf;h=d363a4e63ed4d0e248db6cee433b02504ee7d70c;hb=cf84b54d691e01bb7624162d82ea4646020d7230;hp=5a06d5d9af24ddb491a5f5c79b7c79137355eff6;hpb=13c4ee0105fd6eb935525130ffca96a4c69bc191;p=htsworkflow.git

diff --git a/scripts/srf b/scripts/srf
index 5a06d5d..d363a4e 100644
--- a/scripts/srf
+++ b/scripts/srf
@@ -6,7 +6,7 @@ import os
 import sys
 
 from htsworkflow.pipelines import runfolder
-from htsworkflow.pipelines.srf import make_commands, run_srf_commands
+from htsworkflow.pipelines.srf import make_commands, run_srf_commands, pathname_to_run_name
 from htsworkflow.pipelines.srf import ILLUMINA2SRF10, ILLUMINA2SRF11, SOLEXA2SRF
 
 def make_parser():
@@ -106,7 +106,7 @@ def main(cmdline=None):
 
     if not opts.dry_run:
       for cwd, cmd_list in cmds.items():
-        run_srf_command(cwd, cmd_list, opts.jobs)
+        run_srf_commands(cwd, cmd_list, opts.jobs)
     else:
       for cwd, cmd_list in cmds.items():
         print cwd