X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=blobdiff_plain;f=test%2Ftest_srf2fastq.py;h=9185fffde9d516d8651a5ade40723645ab82fa26;hb=afe61390da5434277effe31f7c73ae41f55f0e00;hp=74e031ca7324174362de8695fb99ba4c50d830c7;hpb=c79ee97e6c1345658e2a48d79081258249268936;p=htsworkflow.git diff --git a/test/test_srf2fastq.py b/test/test_srf2fastq.py index 74e031c..9185fff 100644 --- a/test/test_srf2fastq.py +++ b/test/test_srf2fastq.py @@ -1,7 +1,7 @@ import os from StringIO import StringIO import sys -import unittest +from unittest2 import TestCase _module_path, _module_name = os.path.split(__file__) sys.path.append(os.path.join(_module_path, '..', 'scripts')) @@ -10,7 +10,7 @@ from htsworkflow.pipelines.test.simulate_runfolder import TESTDATA_DIR from htsworkflow.pipelines import srf2fastq -class testSrf2Fastq(unittest.TestCase): +class testSrf2Fastq(TestCase): def test_split_good(self): source = StringIO("""@header AGCTTTTT @@ -135,8 +135,14 @@ IIIIB+++ self.failUnlessEqual(is_cnf1(cnf4_path), False) self.failUnlessEqual(is_cnf1(cnf1_path), True) + def suite(): - return unittest.makeSuite(testSrf2Fastq,'test') + from unittest2 import TestSuite, defaultTestLoader + suite = TestSuite() + suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSrf2Fastq)) + return suite + if __name__ == "__main__": - unittest.main(defaultTest="suite") + from unittest2 import main + main(defaultTest="suite")