refactor and test FLPs
authorDiane Trout <diane@caltech.edu>
Thu, 23 Feb 2006 02:06:27 +0000 (02:06 +0000)
committerDiane Trout <diane@caltech.edu>
Thu, 23 Feb 2006 02:06:27 +0000 (02:06 +0000)
commit9581d5a735082d48f75446326d6622a1f5d6491d
treeb92b45df660de6a08680e3ace8dfb4f9bc3cce01
parente7ef88711a75457f901d60bc71d88b820b412489
refactor and test FLPs
FLPs now dynamically allocate the list of all_matches, which
has the bonus of not needing to pass in the size of the two
sequences that will be seqcomped.
I renamed win_num to size to make it more constent with other container
classes.
Also file_load and file_save were renamed to load and save, again
to be more consistent.
Lastly, I do make sure that I can construct FLPs and save and load them.
alg/flp.cxx
alg/flp.hh
alg/flp_seqcomp.cxx
alg/mussa_class.cxx
alg/nway_entropy.cxx
alg/nway_other.cxx
alg/nway_paths.cxx
alg/nway_paths.hh
seqcomp.cxx
test/test_flp.cxx