from django.utils.translation import ugettext_lazy as _
from django.forms import TextInput, Textarea
-from .models import \
- Antibody, Cellline, Condition, ExperimentType, HTSUser, \
- LibraryType, MultiplexIndex, Species, Affiliation, Library, Tag
+from .models import (
+ Antibody,
+ Cellline,
+ Condition,
+ ExperimentType,
+ HTSUser,
+ LibraryType,
+ MultiplexIndex,
+ Species,
+ Affiliation,
+ Library
+)
from experiments.models import Lane
from inventory.models import PrinterTemplate
from bcmagic.utils import print_zpl_socket
# Let's disable those pesky delete everything by accident features.
admin.site.disable_action('delete_selected')
+
class AffiliationOptions(admin.ModelAdmin):
- list_display = ('name','contact','email')
+ list_display = ('name', 'contact', 'email')
fieldsets = (
- (None, {
- 'fields': (('name','contact','email','users'))
- }),
+ (None, {
+ 'fields': (('name', 'contact', 'email', 'users'))
+ }),
)
# some post 1.0.2 version of django has formfield_overrides
# models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
# }
def formfield_for_dbfield(self, db_field, **kwargs):
- if db_field.name == 'users':
- kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
- rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
- # print db_field.name, kwargs
- return rv
+ if db_field.name == 'users':
+ kwargs['widget'] = widgets.FilteredSelectMultiple(
+ db_field.verbose_name,
+ (db_field.name in self.filter_vertical))
+ rv = super(AffiliationOptions, self).formfield_for_dbfield(
+ db_field,
+ **kwargs)
+ # print db_field.name, kwargs
+ return rv
+
class AntibodyOptions(admin.ModelAdmin):
- search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
- list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
- list_filter = ('antibodies','source')
+ search_fields = ('antigene', 'nickname', 'catalog',
+ 'antibodies', 'source', 'biology', 'notes')
+ list_display = ('antigene', 'nickname', 'antibodies',
+ 'catalog', 'source', 'biology', 'notes')
+ list_filter = ('antibodies', 'source')
fieldsets = (
- (None, {
- 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
- }),
- )
+ (None, {
+ 'fields': (('antigene', 'nickname', 'antibodies'),
+ ('catalog', 'source'),
+ ('biology'),
+ ('notes'))
+ }),
+ )
+
class CelllineOptions(admin.ModelAdmin):
list_display = ('cellline_name', 'notes')
search_fields = ('cellline_name', 'nickname', 'notes')
fieldsets = (
- (None, {
- 'fields': (('cellline_name','nickname',),('notes'),)
- }),
- )
+ (None, {
+ 'fields': (('cellline_name', 'nickname',),
+ ('notes'),)
+ }),
+ )
+
class ConditionOptions(admin.ModelAdmin):
list_display = (('condition_name'), ('notes'),)
fieldsets = (
- (None, {
- 'fields': (('condition_name'),('nickname'),('notes'),)
- }),
- )
+ (None, {
+ 'fields': (('condition_name'),
+ ('nickname'),
+ ('notes'),)
+ }),
+ )
+
class ExperimentTypeOptions(admin.ModelAdmin):
- model = ExperimentType
- #list_display = ('name',)
- #fieldsets = ( (None, { 'fields': ('name',) }), )
+ model = ExperimentType
+ list_display = ('name',)
+ fieldsets = ((None, {'fields': ('name',)}),)
+
class HTSUserCreationForm(UserCreationForm):
class Meta:
model = HTSUser
- fields = ("username",'first_name','last_name')
+ fields = ('username', 'first_name', 'last_name')
+
class HTSUserChangeForm(UserChangeForm):
class Meta:
model = HTSUser
- fields = ("username",'first_name','last_name')
+ fields = ('username', 'first_name', 'last_name')
+
class HTSUserOptions(UserAdmin):
form = HTSUserChangeForm
add_form = HTSUserCreationForm
+
class LaneLibraryInline(admin.StackedInline):
- model = Lane
- extra = 0
+ model = Lane
+ extra = 0
+
class Library_Inline(admin.TabularInline):
- model = Library
+ model = Library
+
class LibraryTypeOptions(admin.ModelAdmin):
list_display = ['name', 'is_paired_end', 'can_multiplex']
model = LibraryType
+
class MultiplexIndexOptions(admin.ModelAdmin):
model = MultiplexIndex
list_display = ['adapter_type', 'multiplex_id', 'sequence']
+
class LibraryOptions(admin.ModelAdmin):
class Media:
css = {
'hidden',
'experiment_type',
'library_type',
- #'cell_line',
+ # 'cell_line',
'stopping_point',
'made_by',
'library_species',
)
list_display_links = ('id', 'library_name',)
fieldsets = (
- (None, {
- 'fields': (
- ('id','library_name','hidden'),
- ('library_species', 'experiment_type'),
- ('library_type', 'multiplex_id'),
- )
- }),
- ('Experiment Detail:', {
- 'fields': (('cell_line', 'replicate',),
- ('condition',),
- ('antibody', ),
- ),
+ (None, {
+ 'fields': (
+ ('id', 'library_name', 'hidden'),
+ ('library_species', 'experiment_type'),
+ ('library_type', 'multiplex_id'),
+ )
+ }),
+ ('Experiment Detail:', {
+ 'fields': (
+ ('cell_line', 'replicate',),
+ ('condition',),
+ ('antibody', )
+ ),
'classes': ('collapse',),
- }),
- ('Creation Information:', {
- 'fields' : (('made_by', 'creation_date', 'stopping_point'),
- ('amplified_from_sample'),
- ('gel_cut_size', 'insert_size',
- 'undiluted_concentration'),
- ('bioanalyzer_concentration','bioanalyzer_image_url'),
- ('bioanalyzer_summary'),
- ('notes'))
- }),
- ('Library/Project Affiliation:', {
- 'fields' : (('account_number', 'affiliations'),)
- }),
- )
+ }),
+ ('Creation Information:', {
+ 'fields': (
+ ('made_by', 'creation_date', 'stopping_point'),
+ ('amplified_from_sample'),
+ ('gel_cut_size', 'insert_size', 'undiluted_concentration'),
+ ('bioanalyzer_concentration', 'bioanalyzer_image_url'),
+ ('bioanalyzer_summary'),
+ ('notes'))
+ }),
+ ('Library/Project Affiliation:', {
+ 'fields': (('account_number', 'affiliations'),)
+ }),
+ )
inlines = [
- LaneLibraryInline,
+ LaneLibraryInline,
]
actions = ['action_print_library_labels']
def action_print_library_labels(self, request, queryset):
- """
- Django action which prints labels for the selected set of labels from the
+ """Django action which prints labels for the selected set of labels from the
Django Admin interface.
"""
- #Probably should ask if the user really meant to print all selected
+ # Probably should ask if the user really meant to print all selected
# libraries if the count is above X. X=10 maybe?
# Grab the library template
- #FIXME: Hardcoding library template name. Not a good idea... *sigh*.
+ # FIXME: Hardcoding library template name. Not a good idea... *sigh*.
EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME = "Library"
try:
- template = PrinterTemplate.objects.get(item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
+ template = PrinterTemplate.objects.get(
+ item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
except PrinterTemplate.DoesNotExist:
- self.message_user(request, "Could not find a library template with ItemType.name of '%s'" % \
- (EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
+ self.message_user(
+ request,
+ "Could not find a library template with ItemType.name of '%s'" %
+ (EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
return
# ZPL Template
t = Template(template.template)
zpl_list = []
- #Iterate over selected labels to print
+ # Iterate over selected labels to print
for library in queryset.all():
# Django Template Context
field.widget.attrs["rows"] = "3"
return field
+
class SpeciesOptions(admin.ModelAdmin):
fieldsets = (
(None, {
}),
)
+
class TagOptions(admin.ModelAdmin):
list_display = ('tag_name', 'context')
fieldsets = (
(None, {
- 'fields': ('tag_name', 'context')
- }),
- )
+ 'fields': ('tag_name', 'context')
+ }),
+ )
admin.site.register(Library, LibraryOptions)
admin.site.register(Affiliation, AffiliationOptions)
admin.site.register(Cellline, CelllineOptions)
admin.site.register(Condition, ConditionOptions)
admin.site.register(ExperimentType, ExperimentTypeOptions)
-#admin.site.register(HTSUser, HTSUserOptions)
admin.site.register(LibraryType, LibraryTypeOptions)
admin.site.register(MultiplexIndex, MultiplexIndexOptions)
admin.site.register(Species, SpeciesOptions)
-#admin.site.register(Tag, TagOptions)
projects / htsworkflow.git / commitdiff