From: Diane Trout <diane@caltech.edu>
Date: Thu, 12 Jul 2012 18:16:17 +0000 (-0700)
Subject: Look for RTAConfig.xml file generated by pipeline 1.12 era.
X-Git-Url: http://woldlab.caltech.edu/gitweb/?a=commitdiff_plain;h=ad2789cc78cc9f6e5aa00da8b89045d8f2eaca50;p=htsworkflow.git

Look for RTAConfig.xml file generated by pipeline 1.12 era.
---

diff --git a/htsworkflow/pipelines/ipar.py b/htsworkflow/pipelines/ipar.py
index 376c5bd..28f523d 100644
--- a/htsworkflow/pipelines/ipar.py
+++ b/htsworkflow/pipelines/ipar.py
@@ -226,7 +226,8 @@ def ipar(pathname):
         # its still live.
 
     # look for parameter xml file
-    paramfiles = [os.path.join(pathname, 'config.xml'),
+    paramfiles = [os.path.join(pathname, 'RTAConfig.xml'),
+                  os.path.join(pathname, 'config.xml'),
                   os.path.join(path, '.params')]
     for paramfile in paramfiles:
         if os.path.exists(paramfile):