From 3b0f9f973ad3ff2d50df5b934cd40c7b85ca237d Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@caltech.edu>
Date: Thu, 8 Jun 2006 01:25:46 +0000
Subject: [PATCH] minor improvements to python embedding code tweak the cmake
 files a bit, and shorten the namespace name

---
 qui/CMakeLists.txt | 10 ++++++++--
 qui/mussagl.cpp    | 13 +++++++------
 2 files changed, 15 insertions(+), 8 deletions(-)

diff --git a/qui/CMakeLists.txt b/qui/CMakeLists.txt
index 7a62c7a..c38f1da 100644
--- a/qui/CMakeLists.txt
+++ b/qui/CMakeLists.txt
@@ -56,18 +56,20 @@ SET(GUI_SOURCES
       seqbrowser/SequenceDescription.cpp
 
      )
-SET(SOURCES
+SET(MAIN_SOURCES
       mussagl.cpp)
 SET(RCCS ../icons.qrc)
 
 QT4_ADD_RESOURCES(RCC_SOURCE ${RCCS})
 QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})
+SET(SOURCES  ${MOC_SOURCES} ${GUI_SOURCES} ${RCC_SOURCES} ${MAIN_SOURCES})
 INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} 
                     ${QT_INCLUDES})
+
 ADD_LIBRARY(mussa_qui STATIC ${MOC_SOURCES} ${GUI_SOURCES} ${RCC_SOURCE})
 TARGET_LINK_LIBRARIES(mussa_qui 
                         mussa_core)
-ADD_EXECUTABLE(mussagl WIN32 MACOSX_BUNDLE ${SOURCES} )
+ADD_EXECUTABLE(mussagl WIN32 MACOSX_BUNDLE ${MAIN_SOURCES} )
 # ${SOURCES} ${MOC_SOURCES} ${RCC_SOURCE} )
 LINK_DIRECTORIES(${MUSSA_BINARY_DIR}/alg
                  ${MUSSA_BINARY_DIR}/py)
@@ -80,6 +82,10 @@ TARGET_LINK_LIBRARIES(mussagl
                         ${BOOST_FILESYSTEM_LIBRARY}
                       )
 IF(USE_PYTHON)
+  SET_SOURCE_FILES_PROPERTIES(${SOURCES}
+                              PROPERTIES
+                              COMPILE_FLAGS "-DUSE_PYTHON=1"
+                             )
   TARGET_LINK_LIBRARIES(mussagl
                           ${BOOST_PYTHON_LIBRARY}
                           optimized ${PYTHON_LIBRARIES}
diff --git a/qui/mussagl.cpp b/qui/mussagl.cpp
index 15b01b2..dcf393b 100644
--- a/qui/mussagl.cpp
+++ b/qui/mussagl.cpp
@@ -1,6 +1,7 @@
 #include <boost/filesystem/operations.hpp>
 #ifdef USE_PYTHON
 #include <boost/python.hpp>
+namespace py = boost::python;
 #endif
 
 using namespace boost::filesystem;
@@ -35,10 +36,10 @@ int main(int argc, char **argv)
 #ifdef USE_PYTHON
     if (opts.runAsPythonInterpeter) {
       Py_Initialize();
-      boost::python::object main_module((boost::python::handle<>(boost::python::borrowed(PyImport_AddModule("__main__")))));
-      boost::python::object main_namespace = main_module.attr("__dict__");
+      py::object main_module((py::handle<>(py::borrowed(PyImport_AddModule("__main__")))));
+      py::object main_namespace = main_module.attr("__dict__");
 
-      boost::python::handle<> ignored((PyRun_String(
+      py::handle<> ignored((PyRun_String(
                         //"from IPython.Shell import IPShellEmbed\n"
                         //"shell = IPShellEmbed(['mussa'], '')\n",
                         //"import mussa\n"
@@ -50,8 +51,8 @@ int main(int argc, char **argv)
                         main_namespace.ptr(),
                         main_namespace.ptr())
                       ));
-      boost::python::object square = main_module.attr("square");
-      int result = boost::python::extract<int>(square(3));
+      py::object square = main_module.attr("square");
+      int result = py::extract<int>(square(3));
       std::cout << "C++ has " << result << std::endl;
       PyRun_InteractiveLoop(stdin, "mussa");
     } else 
@@ -68,7 +69,7 @@ int main(int argc, char **argv)
     qFatal(e.what());
   }
 #ifdef USE_PYTHON
-  catch (boost::python::error_already_set e) {
+  catch (py::error_already_set e) {
     PyErr_Print();
   }
 #endif /* USE_PYTHON */
-- 
2.30.2