SeqAn-1.1/seqan/basic.h

   1  /*==========================================================================
   2                 SeqAn - The Library for Sequence Analysis
   3                           http://www.seqan.de
   4  ============================================================================
   5   Copyright (C) 2007
   6
   7   This library is free software; you can redistribute it and/or
   8   modify it under the terms of the GNU Lesser General Public
   9   License as published by the Free Software Foundation; either
  10   version 3 of the License, or (at your option) any later version.
  11
  12   This library is distributed in the hope that it will be useful,
  13   but WITHOUT ANY WARRANTY; without even the implied warranty of
  14   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  15   Lesser General Public License for more details.
  16
  17  ============================================================================
  18   $Id: basic.h,v 1.2 2009/05/06 20:32:59 langmead Exp $
  19  ==========================================================================*/
  20
  21 #ifndef SEQAN_HEADER_BASIC_H
  22 #define SEQAN_HEADER_BASIC_H
  23
  24 //____________________________________________________________________________
  25 // prerequisites
  26
  27 #include <seqan/platform.h>
  28
  29 //#include <cstring>
  30 #ifdef PLATFORM_WINDOWS
  31 #include <limits>       // limits include file exists only for g++ >= 3.0
  32 #endif
  33
  34 #include <cstddef>      // size_t
  35 #include <cstdio>       // FILE, basic_debug
  36 #include <ctime>
  37 #include <iterator>
  38 #include <algorithm>
  39 #include <memory.h> // memset
  40 #include <string>       // basic_profile
  41
  42 #define SEQAN_NAMESPACE_MAIN seqan
  43
  44 //____________________________________________________________________________
  45
  46 #include <seqan/basic/basic_forwards.h>
  47 #ifdef SEQAN_SWITCH_USE_FORWARDS
  48 #include <seqan/basic/basic_generated_forwards.h>
  49 #endif
  50
  51 #include <seqan/basic/basic_debug.h>
  52 #include <seqan/basic/basic_profile.h>
  53 #include <seqan/basic/basic_definition.h>
  54 #include <seqan/basic/basic_metaprogramming.h>
  55 #include <seqan/basic/basic_type.h>
  56 #include <seqan/basic/basic_tag.h>
  57
  58 //____________________________________________________________________________
  59 // allocators
  60
  61 #include <seqan/basic/basic_allocator_interface.h>
  62 #include <seqan/basic/basic_allocator_to_std.h>
  63
  64 #include <seqan/basic/basic_holder.h>
  65
  66 #include <seqan/basic/basic_allocator_simple.h>
  67 #include <seqan/basic/basic_allocator_singlepool.h>
  68 #include <seqan/basic/basic_allocator_multipool.h>
  69 //#include <seqan/basic/basic_allocator_chunkpool.h>
  70
  71 //____________________________________________________________________________
  72
  73 #include <seqan/basic/basic_converter.h>
  74 #include <seqan/basic/basic_compare.h>
  75 #include <seqan/basic/basic_operator.h>
  76
  77 #include <seqan/basic/basic_host.h>
  78
  79 //____________________________________________________________________________
  80 // iterators
  81
  82 #include <seqan/basic/basic_iterator.h>
  83 #include <seqan/basic/basic_iterator_base.h>
  84
  85 #include <seqan/basic/basic_transport.h>
  86
  87 #include <seqan/basic/basic_iterator_simple.h>
  88 #include <seqan/basic/basic_iterator_adaptor.h>
  89 #include <seqan/basic/basic_iterator_position.h>
  90 #include <seqan/basic/basic_iterator_adapt_std.h>
  91 //#include <seqan/basic_identifier.h>
  92
  93 #include <seqan/basic/basic_proxy.h>
  94
  95 #include <seqan/basic/basic_pointer.h>
  96
  97 //____________________________________________________________________________
  98 // alphabets
  99
 100 #include <seqan/basic/basic_alphabet_interface.h>
 101 #include <seqan/basic/basic_alphabet_trait_basic.h>
 102
 103 #include <seqan/basic/basic_alphabet_interface2.h>
 104
 105 #include <seqan/basic/basic_alphabet_simple_tabs.h>
 106 #include <seqan/basic/basic_alphabet_simple.h>
 107
 108 //____________________________________________________________________________
 109
 110 //#include <seqan/basic/basic_counted_ptr>
 111 #include <seqan/basic/basic_volatile_ptr.h>
 112
 113 #include <seqan/basic/basic_aggregates.h>
 114
 115 #endif //#ifndef SEQAN_HEADER_...