SeqAn-1.1/seqan/sequence.h

   1  /*==========================================================================
   2                 SeqAn - The Library for Sequence Analysis
   3                           http://www.seqan.de
   4  ============================================================================
   5   Copyright (C) 2007
   6
   7   This library is free software; you can redistribute it and/or
   8   modify it under the terms of the GNU Lesser General Public
   9   License as published by the Free Software Foundation; either
  10   version 3 of the License, or (at your option) any later version.
  11
  12   This library is distributed in the hope that it will be useful,
  13   but WITHOUT ANY WARRANTY; without even the implied warranty of
  14   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  15   Lesser General Public License for more details.
  16
  17  ============================================================================
  18   $Id: sequence.h,v 1.1 2008/08/25 16:20:06 langmead Exp $
  19  ==========================================================================*/
  20
  21 #ifndef SEQAN_HEADER_SEQUENCE_H
  22 #define SEQAN_HEADER_SEQUENCE_H
  23
  24 //____________________________________________________________________________
  25 // prerequisites
  26
  27 #include <seqan/basic.h>
  28
  29 //____________________________________________________________________________
  30
  31 #include <seqan/sequence/sequence_forwards.h>
  32
  33 #ifdef SEQAN_SWITCH_USE_FORWARDS
  34 #include <seqan/sequence/sequence_generated_forwards.h>
  35 #endif
  36
  37 #include <seqan/sequence/sequence_interface.h>
  38 #include <seqan/sequence/lexical.h>
  39
  40 //____________________________________________________________________________
  41 // segments (suffix, ...)
  42
  43 #include <seqan/sequence/segment_base.h>
  44 #include <seqan/sequence/segment_infix.h>
  45 #include <seqan/sequence/segment_suffix.h>
  46 #include <seqan/sequence/segment_prefix.h>
  47
  48 //____________________________________________________________________________
  49 // strings
  50
  51 #include <seqan/sequence/string_base.h>
  52 #include <seqan/sequence/string_pointer.h>
  53 #include <seqan/sequence/string_alloc.h>
  54 #include <seqan/sequence/string_array.h>
  55 #include <seqan/sequence/string_cstyle.h>
  56 #include <seqan/sequence/string_stack.h>
  57 #include <seqan/sequence/string_packed.h>
  58 #include <seqan/sequence/string_value_expand.h>
  59
  60 #include <seqan/sequence/std_string.h>
  61
  62 #include <seqan/sequence/sequence_multiple.h>
  63 #include <seqan/sequence/sequence_shortcuts.h>
  64
  65 #endif //#ifndef SEQAN_HEADER_...