Imported Debian patch 0.12.7-3

[bowtie.git] / debian / doc-base

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+Document: bowtie
+Title: Manual for bowtie
+Author:  Ben Langmead
+Abstract: ultrafast memory-efficient short read aligner
+ Bowtie is an ultrafast, memory-efficient short read aligner geared toward
+ quickly aligning large sets of short DNA sequences (reads) to large genomes. It
+ aligns 35-base-pair reads to the human genome at a rate of 25 million reads per
+ hour on a typical workstation. Bowtie indexes the genome with a Burrows-Wheeler
+ index to keep its memory footprint small: for the human genome, the index is
+ typically about 2.2 GB (for unpaired alignment) or 2.9 GB (for paired-end or
+ colorspace alignment). Multiple processors can be used simultaneously to
+ achieve greater alignment speed. Bowtie can also output alignments in the
+ standard SAM format, allowing Bowtie to interoperate with other tools
+ supporting SAM, including the SAMtools consensus, SNP, and indel callers.
+Section: Science/Biology
+
+Format: html
+Files: /usr/share/doc/bowtie/manual.html
+Index: /usr/share/doc/bowtie/manual.html