X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=MakeBamFromRds.py;fp=MakeBamFromRds.py;h=730c20be6fb147f84e58b7f80485199e0975ad3a;hp=bfb48fde3fc0bebc9bdceaa1dc16f83dd566da59;hb=77dccd7c98d8cdb60caaf178b1123df71ea662c9;hpb=bc30aca13e5ec397c92e67002fbf7a103130b828 diff --git a/MakeBamFromRds.py b/MakeBamFromRds.py index bfb48fd..730c20b 100644 --- a/MakeBamFromRds.py +++ b/MakeBamFromRds.py @@ -22,13 +22,13 @@ import pysam import ReadDataset from commoncode import getConfigParser, getConfigOption, getConfigBoolOption, getConfigIntOption +VERSION = "1.0" def main(argv=None): if not argv: argv = sys.argv - verstring = "makeBamFromRds: version 1.0" - print verstring + print "makeBamFromRds: version %s" % VERSION doPairs = False @@ -134,7 +134,7 @@ def makeBamFromRds(rdsfile, outfilename, withUniqs=True, withMulti=True, for chrom in chromRemoveList: chromList.remove(chrom) - header = {"HD": {"VN": "1.0"}} + header = {"HD": {"VN": VERSION}} if referenceSequenceList: header["SQ"] = referenceSequenceList