X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=distalPairs.py;fp=distalPairs.py;h=dc836501c6b2b98f53b5a4a84ce8778c9673a1a7;hp=be403109110c3fb40f7bba831f6c2ea48e496536;hb=b54eee5365a0fad35d2f6168eaac82ff5a359222;hpb=a3c0e60eb30c924232d7baaa348a15c5554e3864

diff --git a/distalPairs.py b/distalPairs.py
index be40310..dc83650 100755
--- a/distalPairs.py
+++ b/distalPairs.py
@@ -147,13 +147,15 @@ def addSplicesToUniqReads(RDS, uniqDict):
     for readID in splicesDict:
         theRead = splicesDict[readID]
         read0 = theRead[0]
-        del read0[1]
+        read0["start"] = read0["startL"]
+        del read0["stopL"]
         try:
             uniqDict[readID].append(read0)
         except:
             if len(theRead) == 4:
                 read2 = theRead[2]
-                del read2[1]
+                read2["start"] = read2["startL"]
+                del read2["stopL"]
                 uniqDict[readID] = [read0,read2]