X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=docs%2FrunSNPAnalysis.sh;fp=docs%2FrunSNPAnalysis.sh;h=51f2e4ccd8bc9ad166cd8f7a5609e6648413c929;hp=103b576e73ac450c0af315645abfca41d7abbb40;hb=4ad5495359e4322da39868020a7398676261679e;hpb=cfc5602b26323ad2365295145e3f6c622d912eb4 diff --git a/docs/runSNPAnalysis.sh b/docs/runSNPAnalysis.sh index 103b576..51f2e4c 100755 --- a/docs/runSNPAnalysis.sh +++ b/docs/runSNPAnalysis.sh @@ -1,5 +1,7 @@ #!/bin/bash # +# This is no longer supported. It is recommended that the pythin script of the same name be used instead. +# # runSNPAnalysis.sh # # Usages: $ERANGEPATH/runSNPAnalysis.sh mouse rdsfile label rmaskdbfile dbsnpfile uniqStartMin totalRatio rpkmfile cachepages @@ -59,4 +61,4 @@ python $ERANGEPATH/getNovelSNPs.py $1 $3.nr_dbsnp_geneinfo.txt $3.nr.final.txt # make bed file for displaying the snps on UCSC genome browser python $ERANGEPATH/makeSNPtrack.py $3.nr_snps.txt $3 $3.nr_snps.bed -fi \ No newline at end of file +fi