X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=docs%2FrunStandardAnalysis.sh;fp=docs%2FrunStandardAnalysis.sh;h=830abea6ecec73a603597d0989e49763cc5f67bd;hp=aa5fe60588a30ceba6a65301db81b13ac4f6051f;hb=4ad5495359e4322da39868020a7398676261679e;hpb=cfc5602b26323ad2365295145e3f6c622d912eb4 diff --git a/docs/runStandardAnalysis.sh b/docs/runStandardAnalysis.sh index aa5fe60..830abea 100755 --- a/docs/runStandardAnalysis.sh +++ b/docs/runStandardAnalysis.sh @@ -1,5 +1,7 @@ #!/bin/bash # +# This is no longer supported. It is recommended that the pythin script of the same name be used instead. +# # runStandardAnalysis.sh # ENRAGE # @@ -88,4 +90,4 @@ python $ERANGEPATH/geneMrnaCountsWeighted.py $1 $2.rds $2.expanded.rpkm $2.multi echo "python $ERANGEPATH/normalizeFinalExonic.py $2.rds $2.expanded.rpkm $2.multi.count $2.final.rpkm --multifraction --withGID --cache" python $ERANGEPATH/normalizeFinalExonic.py $2.rds $2.expanded.rpkm $2.multi.count $2.final.rpkm --multifraction --withGID --cache -fi \ No newline at end of file +fi