X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=geneLocusBins.py;h=14cb2b5ee2b5617fba45f1a69ef94386784c0b11;hp=49745dc0c1361c2a8dbe4736c9c8630396fd93e4;hb=HEAD;hpb=77dccd7c98d8cdb60caaf178b1123df71ea662c9

diff --git a/geneLocusBins.py b/geneLocusBins.py
index 49745dc..14cb2b5 100755
--- a/geneLocusBins.py
+++ b/geneLocusBins.py
@@ -138,7 +138,7 @@ def writeBins(gidList, geneinfoDict, gidBins, gidLen, outfilename, normalizeBins
             try:
                 geneinfo = geneinfoDict[gid]
                 symbol = geneinfo[0][0]
-            except KeyError:
+            except (KeyError, IndexError):
                 pass
         else:
             symbol = gid
@@ -154,6 +154,7 @@ def writeBins(gidList, geneinfoDict, gidBins, gidLen, outfilename, normalizeBins
                 try:
                     normalizedValue = 100. * binAmount / tagCount
                 except ZeroDivisionError:
+                    #TODO: this is the right way to refactor the original code, but I don't think this is the right answer
                     normalizedValue = 100. * binAmount
 
                 binAmount = normalizedValue
@@ -167,4 +168,4 @@ def writeBins(gidList, geneinfoDict, gidBins, gidLen, outfilename, normalizeBins
 
 
 if __name__ == "__main__":
-    main(sys.argv)
+    main(sys.argv)
\ No newline at end of file