X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=getNovelSNPs.py;fp=getNovelSNPs.py;h=e95d72693c76df13871da4cf809c99e43c41d36a;hp=4091281c8fe0f5410090b23db7276496fe49d6ed;hb=77dccd7c98d8cdb60caaf178b1123df71ea662c9;hpb=bc30aca13e5ec397c92e67002fbf7a103130b828 diff --git a/getNovelSNPs.py b/getNovelSNPs.py index 4091281..e95d726 100755 --- a/getNovelSNPs.py +++ b/getNovelSNPs.py @@ -68,7 +68,6 @@ def doNotProcessLine(line): def getNovelSNPInfo(genome, snpEntry, hg): fields = snpEntry.split() - #TODO: refactor naming. is fields[8] rpkm? if fields[8].find("N\A") == -1: return snpEntry else: @@ -93,4 +92,4 @@ def getNovelSNPInfo(genome, snpEntry, hg): if __name__ == "__main__": - main(sys.argv) \ No newline at end of file + main(sys.argv)