X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=getSNPs.py;h=f5826751fdecdc3643967ea8e04df8331fbf94e3;hp=f6071ae444be9ca294ac4c4ff39b50a74e3d0cb4;hb=03f1e0b3bab22d517ad75b9af4d54e8fcb8540fb;hpb=b54eee5365a0fad35d2f6168eaac82ff5a359222

diff --git a/getSNPs.py b/getSNPs.py
index f6071ae..f582675 100755
--- a/getSNPs.py
+++ b/getSNPs.py
@@ -75,7 +75,7 @@ def makeParser(usage=""):
     forceChr = getConfigBoolOption(configParser, section, "forceChr", False)
     cachePages = getConfigIntOption(configParser, section, "cachePages", 0)
 
-    parser.set_defaults(doSplices=True, forceChr=False, cachePages=0)
+    parser.set_defaults(doSplices=doSplices, forceChr=forceChr, cachePages=cachePages)
 
     return parser