X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=getsplicefa.py;h=819675f26f869895fc12b8058daf195f02b2d07b;hp=cbca805a2426ace12e5121668cffecf2c646d3d5;hb=HEAD;hpb=0d3e3112fd04c2e6b44a25cacef1d591658ad181

diff --git a/getsplicefa.py b/getsplicefa.py
index cbca805..819675f 100755
--- a/getsplicefa.py
+++ b/getsplicefa.py
@@ -19,7 +19,8 @@ def main(argv=None):
     print verstring
     delimiter = "|"
 
-    usage = "usage: python %prog genome ucscModels outfilename maxBorder [--verbose] [--spacer num]\
+    usage = "usage: python getsplicefa.py genome ucscModels outfilename maxBorder [--verbose] [--spacer num]\
+            \n\twhere ucscModels is the gene model file in same format as the UCSC Table Browser\
             \n\twhere spacer is by default 2, and maxBorder should be readlen - (2 * spacer)\
             \n\tdelimiter is set to %s - edit the code to change it, if necessary\n" % delimiter
 
@@ -31,7 +32,7 @@ def main(argv=None):
         genome = args[0]
         datafilename = args[1]
         outfilename = args[2]
-        maxBorder = args[3]
+        maxBorder = int(args[3])
     except IndexError:
         print usage
         sys.exit(1)