X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=siteintersects.py;fp=siteintersects.py;h=9c0c38fa197cbd18669f65269c6f94672cc6e604;hp=58d9e3059ad8a587c10badd3fb8c7cc820462047;hb=4ad5495359e4322da39868020a7398676261679e;hpb=cfc5602b26323ad2365295145e3f6c622d912eb4

diff --git a/siteintersects.py b/siteintersects.py
index 58d9e30..9c0c38f 100755
--- a/siteintersects.py
+++ b/siteintersects.py
@@ -127,7 +127,7 @@ def compareSites(siteFilename, rejectFilename, outfilename, siteDict, rejectSite
 
         siteNotCommon = True
         #TODO: as handed to me this is O(n^m) - probably could be better...
-        #TODO: QForAli - if there are multiple matches will count them but only write the first match to the file
+        #TODO: if there are multiple matches will count them but only write the first match to the file
         for (rstart, rstop, rline) in siteDict[chrom]:
             if regionsOverlap(start, stop, rstart, rstop):
                 commonSites += 1