X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=erange.git;a=blobdiff_plain;f=test%2FtestGetFasta.py;fp=test%2FtestGetFasta.py;h=9ea5408ba70336c04a3f729dc0cbbe2f51c3acff;hp=cb71685b0089c13deda115c290734ffa28de7c28;hb=0d3e3112fd04c2e6b44a25cacef1d591658ad181;hpb=5e4ae21098dba3d1edcf11e7279da0d84c3422e4 diff --git a/test/testGetFasta.py b/test/testGetFasta.py index cb71685..9ea5408 100644 --- a/test/testGetFasta.py +++ b/test/testGetFasta.py @@ -5,9 +5,9 @@ Created on Aug 27, 2010 ''' import unittest import os -from Erange import getfasta -#from Erange import ReadDataset -from Erange.commoncode import readDataset +from erange import getfasta +#from erange import ReadDataset +from erange import ReadDataset testDBName = "testRDS.rds" @@ -133,7 +133,7 @@ class TestGetFasta(unittest.TestCase): # need to check to see if the issue might be with commoncode.findPeak as there is a lot of questionable # logic in that one def testGetRegionUsingRDS(self): - rds = readDataset(testDBName, initialize=True, datasetType="DNA", verbose=False) + rds = ReadDataset.ReadDataset(testDBName, initialize=True, datasetType="DNA", verbose=False) rds.insertMetadata([("readsize", "100")]) rdsEntryList = [("testRead", "chr1", 10, 100, "+", 1.0, "", "")] rds.insertUniqs(rdsEntryList)