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(parent: 0d3e311) | patch
erange 4.0a dev release with integrated cistematic
authorSean Upchurch <sau@caltech.edu>
Tue, 30 Nov 2010 22:55:15 +0000 (14:55 -0800)
committerSean Upchurch <sau@caltech.edu>
Tue, 30 Nov 2010 22:55:15 +0000 (14:55 -0800)
commitbc30aca13e5ec397c92e67002fbf7a103130b828
treeb562d4fdfcd7234f67ef5dc28a229fa0a9069bactree | snapshot
parent0d3e3112fd04c2e6b44a25cacef1d591658ad181commit | diff
erange 4.0a dev release with integrated cistematic
65 files changed:
cistematic/__init__.py [new file with mode: 0644] blob
cistematic/cisstat/__init__.py [new file with mode: 0644] blob
cistematic/cisstat/analyzego.py [new file with mode: 0644] blob
cistematic/cisstat/chi2.py [new file with mode: 0644] blob
cistematic/cisstat/enrichment.py [new file with mode: 0644] blob
cistematic/cisstat/fisher.py [new file with mode: 0644] blob
cistematic/cisstat/helper.py [new file with mode: 0644] blob
cistematic/cisstat/score.py [new file with mode: 0644] blob
cistematic/cisstat/setup.py [new file with mode: 0644] blob
cistematic/cisstat/statextension.c [new file with mode: 0644] blob
cistematic/core/__init__.py [new file with mode: 0644] blob
cistematic/core/cismatcher.py [new file with mode: 0644] blob
cistematic/core/geneinfo.py [new file with mode: 0644] blob
cistematic/core/homology.py [new file with mode: 0644] blob
cistematic/core/motif.py [new file with mode: 0644] blob
cistematic/core/motifextension.c [new file with mode: 0644] blob
cistematic/core/orthomatcher.py [new file with mode: 0644] blob
cistematic/core/protein.py [new file with mode: 0644] blob
cistematic/core/setup.py [new file with mode: 0644] blob
cistematic/experiments/__init__.py [new file with mode: 0644] blob
cistematic/experiments/analyzeMotifs.py [new file with mode: 0644] blob
cistematic/experiments/conservation.py [new file with mode: 0644] blob
cistematic/experiments/draw.py [new file with mode: 0644] blob
cistematic/experiments/experiment.py [new file with mode: 0644] blob
cistematic/experiments/fasta.py [new file with mode: 0644] blob
cistematic/experiments/genexp.py [new file with mode: 0644] blob
cistematic/experiments/locate.py [new file with mode: 0644] blob
cistematic/experiments/orthology.py [new file with mode: 0644] blob
cistematic/experiments/phyloFoot.py [new file with mode: 0644] blob
cistematic/experiments/phyloTest.py [new file with mode: 0644] blob
cistematic/experiments/randomset.py [new file with mode: 0644] blob
cistematic/experiments/simple.py [new file with mode: 0644] blob
cistematic/experiments/varyLength.py [new file with mode: 0644] blob
cistematic/genomes/__init__.py [new file with mode: 0644] blob
cistematic/genomes/athaliana.py [new file with mode: 0644] blob
cistematic/genomes/btaurus.py [new file with mode: 0644] blob
cistematic/genomes/cbrenneri.py [new file with mode: 0644] blob
cistematic/genomes/cbriggsae.py [new file with mode: 0644] blob
cistematic/genomes/celegans.py [new file with mode: 0644] blob
cistematic/genomes/cfamiliaris.py [new file with mode: 0644] blob
cistematic/genomes/cremanei.py [new file with mode: 0644] blob
cistematic/genomes/dmelanogaster.py [new file with mode: 0644] blob
cistematic/genomes/drerio.py [new file with mode: 0644] blob
cistematic/genomes/ecaballus.py [new file with mode: 0644] blob
cistematic/genomes/ggallus.py [new file with mode: 0644] blob
cistematic/genomes/hsapiens.py [new file with mode: 0644] blob
cistematic/genomes/mdomestica.py [new file with mode: 0644] blob
cistematic/genomes/mmusculus.py [new file with mode: 0644] blob
cistematic/genomes/rnorvegicus.py [new file with mode: 0644] blob
cistematic/genomes/scerevisiae.py [new file with mode: 0644] blob
cistematic/genomes/spurpuratus.py [new file with mode: 0644] blob
cistematic/genomes/xtropicalis.py [new file with mode: 0644] blob
cistematic/programs/Consensus.py [new file with mode: 0755] blob
cistematic/programs/Gibbs.py [new file with mode: 0644] blob
cistematic/programs/__init__.py [new file with mode: 0644] blob
cistematic/programs/cisGreedy.py [new file with mode: 0644] blob
cistematic/programs/cisSampler.py [new file with mode: 0644] blob
cistematic/programs/fastcomp.py [new file with mode: 0644] blob
cistematic/programs/locator.py [new file with mode: 0644] blob
cistematic/programs/mafft.py [new file with mode: 0644] blob
cistematic/programs/meme.py [new file with mode: 0644] blob
cistematic/programs/paircomp.py [new file with mode: 0644] blob
cistematic/programs/parent.py [new file with mode: 0644] blob
rnapath/RNAPATH.py diff | blob | history
rnapath/processvelvet.py diff | blob | history
ERANGE http://woldlab.caltech.edu/erange