woldlab.caltech.edu Git - erange.git/tree

-rw-r--r--	10632	MakeBamFromRds.py	blob \| history \| raw
-rw-r--r--	15117	MakeRdsFromBam.py	blob \| history \| raw
-rw-r--r--	664	Peak.py	blob \| history \| raw
-rw-r--r--	35237	ReadDataset.py	blob \| history \| raw
-rw-r--r--	2221	Region.py	blob \| history \| raw
-rw-r--r--	0	__init__.py	blob \| history \| raw
-rwxr-xr-x	5245	altSpliceCounts.py	blob \| history \| raw
-rwxr-xr-x	3149	analyzego.py	blob \| history \| raw
-rw-r--r--	6669	bamPreprocessing.py	blob \| history \| raw
-rwxr-xr-x	803	bedtoregion.py	blob \| history \| raw
-rwxr-xr-x	1052	binstocdf.py	blob \| history \| raw
-rwxr-xr-x	3424	buildMatrix.py	blob \| history \| raw
-rwxr-xr-x	1572	buildrmaskdb.py	blob \| history \| raw
-rwxr-xr-x	2764	buildsnpdb.py	blob \| history \| raw
-rwxr-xr-x	827	cdfdist.py	blob \| history \| raw
-rwxr-xr-x	7367	checkrmask.py	blob \| history \| raw
drwxr-xr-x	-	chiapet	tree \| history
-rwxr-xr-x	3641	chkSNPrmask.py	blob \| history \| raw
-rwxr-xr-x	5076	chksnp.py	blob \| history \| raw
drwxr-xr-x	-	cistematic	tree \| history
-rwxr-xr-x	816	colsum.py	blob \| history \| raw
-rwxr-xr-x	2726	combineRPKMs.py	blob \| history \| raw
-rwxr-xr-x	4141	combinerds.py	blob \| history \| raw
-rwxr-xr-x	30289	commoncode.py	blob \| history \| raw
-rwxr-xr-x	854	crossmatch.py	blob \| history \| raw
-rwxr-xr-x	5819	distalPairs.py	blob \| history \| raw
drwxr-xr-x	-	docs	tree \| history
-rw-r--r--	6273	farPairs.py	blob \| history \| raw
-rwxr-xr-x	1944	featureIntersects.py	blob \| history \| raw
-rwxr-xr-x	4286	findMotifs.py	blob \| history \| raw
-rwxr-xr-x	42369	findall.py	blob \| history \| raw
-rwxr-xr-x	948	fraction.py	blob \| history \| raw
-rwxr-xr-x	5181	geneDownstreamBins.py	blob \| history \| raw
-rwxr-xr-x	6487	geneLocusBins.py	blob \| history \| raw
-rwxr-xr-x	5948	geneLocusCounts.py	blob \| history \| raw
-rwxr-xr-x	4223	geneLocusPeaks.py	blob \| history \| raw
-rwxr-xr-x	6695	geneMrnaCounts.py	blob \| history \| raw
-rwxr-xr-x	9254	geneMrnaCountsWeighted.py	blob \| history \| raw
-rwxr-xr-x	5849	geneNeighbors.py	blob \| history \| raw
-rwxr-xr-x	6271	geneStallingBins.py	blob \| history \| raw
-rwxr-xr-x	3632	geneStartBins.py	blob \| history \| raw
-rwxr-xr-x	4714	geneUpstreamBins.py	blob \| history \| raw
-rwxr-xr-x	3268	getGOgenes.py	blob \| history \| raw
-rwxr-xr-x	2389	getNovelSNPs.py	blob \| history \| raw
-rwxr-xr-x	5450	getSNPGeneInfo.py	blob \| history \| raw
-rwxr-xr-x	8385	getSNPs.py	blob \| history \| raw
-rwxr-xr-x	14097	getallNRSE.py	blob \| history \| raw
-rwxr-xr-x	10977	getallgenes.py	blob \| history \| raw
-rwxr-xr-x	7986	getallsites.py	blob \| history \| raw
-rwxr-xr-x	7327	getfasta.py	blob \| history \| raw
-rwxr-xr-x	7436	getgosig.py	blob \| history \| raw
-rwxr-xr-x	1098	getmers.py	blob \| history \| raw
-rwxr-xr-x	5477	getsplicefa.py	blob \| history \| raw
-rw-r--r--	1849	gfftocis.py	blob \| history \| raw
-rwxr-xr-x	901	gointersects.py	blob \| history \| raw
-rwxr-xr-x	5730	intersects.py	blob \| history \| raw
-rwxr-xr-x	1434	listGeneFeatures.py	blob \| history \| raw
-rw-r--r--	3525	makeGraphs.py	blob \| history \| raw
-rwxr-xr-x	2264	makeSNPtrack.py	blob \| history \| raw
-rwxr-xr-x	16374	makebedfromrds.py	blob \| history \| raw
-rwxr-xr-x	4065	makerdsfrombed.py	blob \| history \| raw
-rwxr-xr-x	13348	makerdsfromblat.py	blob \| history \| raw
-rwxr-xr-x	11598	makerdsfrombowtie.py	blob \| history \| raw
-rwxr-xr-x	23083	makerdsfromeland2.py	blob \| history \| raw
-rwxr-xr-x	3355	makesitetrack.py	blob \| history \| raw
-rwxr-xr-x	8693	makewiggle.py	blob \| history \| raw
-rw-r--r--	9434	normalizeExpandedExonic.py	blob \| history \| raw
-rwxr-xr-x	5822	normalizeFinalExonic.py	blob \| history \| raw
-rwxr-xr-x	5845	partition.py	blob \| history \| raw
-rwxr-xr-x	1654	peakstoregion.py	blob \| history \| raw
-rwxr-xr-x	6379	plotbardist.py	blob \| history \| raw
-rwxr-xr-x	3368	plotnomogram.py	blob \| history \| raw
-rwxr-xr-x	3891	plotprofile.py	blob \| history \| raw
-rwxr-xr-x	3119	predictSpliceCount.py	blob \| history \| raw
-rwxr-xr-x	5138	profilebins.py	blob \| history \| raw
-rwxr-xr-x	2578	ratio.py	blob \| history \| raw
-rwxr-xr-x	4263	rdsmetadata.py	blob \| history \| raw
-rwxr-xr-x	559	recordLog.py	blob \| history \| raw
-rwxr-xr-x	2488	regionBins.py	blob \| history \| raw
-rwxr-xr-x	9228	regionCounts.py	blob \| history \| raw
-rwxr-xr-x	8437	regionintersects.py	blob \| history \| raw
-rwxr-xr-x	4405	regiontobed.py	blob \| history \| raw
-rw-r--r--	779	rnaAToIFilter.py	blob \| history \| raw
-rw-r--r--	3458	rnaEditing.py	blob \| history \| raw
-rwxr-xr-x	9223	rnafarPairs.py	blob \| history \| raw
drwxr-xr-x	-	rnapath	tree \| history
-rw-r--r--	5947	runRNAPairedAnalysis.py	blob \| history \| raw
-rw-r--r--	3651	runSNPAnalysis.py	blob \| history \| raw
-rw-r--r--	5954	runStandardAnalysis.py	blob \| history \| raw
-rw-r--r--	5472	runStrandedAnalysis.py	blob \| history \| raw
-rwxr-xr-x	10926	scatterfields.py	blob \| history \| raw
-rwxr-xr-x	4750	siteintersects.py	blob \| history \| raw
-rwxr-xr-x	5389	stallCategory.py	blob \| history \| raw
drwxr-xr-x	-	test	tree \| history
-rwxr-xr-x	2204	transcripts.py	blob \| history \| raw
-rwxr-xr-x	3881	trimreads.py	blob \| history \| raw
-rwxr-xr-x	2680	utrChanges.py	blob \| history \| raw
-rwxr-xr-x	10493	weighMultireads.py	blob \| history \| raw