woldlab.caltech.edu Git - erange.git/tree

-rw-r--r--	8900	MakeBamFromRds.py	blob \| history \| raw
-rw-r--r--	12942	MakeRdsFromBam.py	blob \| history \| raw
-rw-r--r--	44657	ReadDataset.py	blob \| history \| raw
-rw-r--r--	0	__init__.py	blob \| history \| raw
-rwxr-xr-x	4887	altSpliceCounts.py	blob \| history \| raw
-rwxr-xr-x	2437	analyzego.py	blob \| history \| raw
-rwxr-xr-x	795	bedtoregion.py	blob \| history \| raw
-rwxr-xr-x	981	binstocdf.py	blob \| history \| raw
-rwxr-xr-x	2972	buildMatrix.py	blob \| history \| raw
-rwxr-xr-x	1558	buildrmaskdb.py	blob \| history \| raw
-rwxr-xr-x	2752	buildsnpdb.py	blob \| history \| raw
-rwxr-xr-x	729	cdfdist.py	blob \| history \| raw
-rwxr-xr-x	6542	checkrmask.py	blob \| history \| raw
drwxr-xr-x	-	chiapet	tree \| history
-rwxr-xr-x	3245	chkSNPrmask.py	blob \| history \| raw
-rwxr-xr-x	5032	chksnp.py	blob \| history \| raw
-rwxr-xr-x	794	colsum.py	blob \| history \| raw
-rwxr-xr-x	2148	combineRPKMs.py	blob \| history \| raw
-rwxr-xr-x	3577	combinerds.py	blob \| history \| raw
-rwxr-xr-x	73706	commoncode.py	blob \| history \| raw
-rwxr-xr-x	842	crossmatch.py	blob \| history \| raw
-rwxr-xr-x	4414	distalPairs.py	blob \| history \| raw
drwxr-xr-x	-	docs	tree \| history
-rw-r--r--	5436	farPairs.py	blob \| history \| raw
-rwxr-xr-x	1469	featureIntersects.py	blob \| history \| raw
-rwxr-xr-x	3435	findMotifs.py	blob \| history \| raw
-rwxr-xr-x	29402	findall.py	blob \| history \| raw
-rwxr-xr-x	955	fraction.py	blob \| history \| raw
-rwxr-xr-x	3998	geneDownstreamBins.py	blob \| history \| raw
-rwxr-xr-x	5101	geneLocusBins.py	blob \| history \| raw
-rwxr-xr-x	4968	geneLocusCounts.py	blob \| history \| raw
-rwxr-xr-x	3617	geneLocusPeaks.py	blob \| history \| raw
-rwxr-xr-x	6851	geneMrnaCounts.py	blob \| history \| raw
-rwxr-xr-x	8911	geneMrnaCountsWeighted.py	blob \| history \| raw
-rwxr-xr-x	5098	geneNeighbors.py	blob \| history \| raw
-rwxr-xr-x	5475	geneStallingBins.py	blob \| history \| raw
-rwxr-xr-x	3672	geneStartBins.py	blob \| history \| raw
-rwxr-xr-x	4220	geneUpstreamBins.py	blob \| history \| raw
-rwxr-xr-x	2834	getGOgenes.py	blob \| history \| raw
-rwxr-xr-x	2382	getNovelSNPs.py	blob \| history \| raw
-rwxr-xr-x	5082	getSNPGeneInfo.py	blob \| history \| raw
-rwxr-xr-x	7512	getSNPs.py	blob \| history \| raw
-rwxr-xr-x	12926	getallNRSE.py	blob \| history \| raw
-rwxr-xr-x	10119	getallgenes.py	blob \| history \| raw
-rwxr-xr-x	7138	getallsites.py	blob \| history \| raw
-rwxr-xr-x	6259	getfasta.py	blob \| history \| raw
-rwxr-xr-x	7009	getgosig.py	blob \| history \| raw
-rwxr-xr-x	1103	getmers.py	blob \| history \| raw
-rwxr-xr-x	4983	getsplicefa.py	blob \| history \| raw
-rw-r--r--	1849	gfftocis.py	blob \| history \| raw
-rwxr-xr-x	905	gointersects.py	blob \| history \| raw
-rw-r--r--	198180864	hepg2.rds	blob \| history \| raw
-rwxr-xr-x	4872	intersects.py	blob \| history \| raw
-rwxr-xr-x	1434	listGeneFeatures.py	blob \| history \| raw
-rw-r--r--	3519	makeGraphs.py	blob \| history \| raw
-rwxr-xr-x	2264	makeSNPtrack.py	blob \| history \| raw
-rwxr-xr-x	13889	makebedfromrds.py	blob \| history \| raw
-rwxr-xr-x	3523	makerdsfrombed.py	blob \| history \| raw
-rwxr-xr-x	12155	makerdsfromblat.py	blob \| history \| raw
-rwxr-xr-x	10632	makerdsfrombowtie.py	blob \| history \| raw
-rwxr-xr-x	22337	makerdsfromeland2.py	blob \| history \| raw
-rwxr-xr-x	2740	makesitetrack.py	blob \| history \| raw
-rwxr-xr-x	6967	makewiggle.py	blob \| history \| raw
-rw-r--r--	7025	normalizeExpandedExonic.py	blob \| history \| raw
-rwxr-xr-x	4971	normalizeFinalExonic.py	blob \| history \| raw
-rwxr-xr-x	4929	partition.py	blob \| history \| raw
-rwxr-xr-x	1518	peakstoregion.py	blob \| history \| raw
-rwxr-xr-x	5211	plotbardist.py	blob \| history \| raw
-rwxr-xr-x	3372	plotnomogram.py	blob \| history \| raw
-rwxr-xr-x	3261	plotprofile.py	blob \| history \| raw
-rwxr-xr-x	2586	predictSpliceCount.py	blob \| history \| raw
-rwxr-xr-x	4324	profilebins.py	blob \| history \| raw
-rwxr-xr-x	2201	ratio.py	blob \| history \| raw
-rwxr-xr-x	3348	rdsmetadata.py	blob \| history \| raw
-rwxr-xr-x	559	recordLog.py	blob \| history \| raw
-rwxr-xr-x	2432	regionBins.py	blob \| history \| raw
-rwxr-xr-x	7886	regionCounts.py	blob \| history \| raw
-rwxr-xr-x	7375	regionintersects.py	blob \| history \| raw
-rwxr-xr-x	3710	regiontobed.py	blob \| history \| raw
-rw-r--r--	779	rnaAToIFilter.py	blob \| history \| raw
-rw-r--r--	2844	rnaEditing.py	blob \| history \| raw
-rwxr-xr-x	6226	rnafarPairs.py	blob \| history \| raw
drwxr-xr-x	-	rnapath	tree \| history
-rwxr-xr-x	9377	scatterfields.py	blob \| history \| raw
-rwxr-xr-x	3901	siteintersects.py	blob \| history \| raw
-rwxr-xr-x	4872	stallCategory.py	blob \| history \| raw
drwxr-xr-x	-	test	tree \| history
-rwxr-xr-x	1742	transcripts.py	blob \| history \| raw
-rwxr-xr-x	3290	trimreads.py	blob \| history \| raw
-rwxr-xr-x	2692	utrChanges.py	blob \| history \| raw
-rwxr-xr-x	9406	weighMultireads.py	blob \| history \| raw